G950669 (LOC106578414)


Basic Information

Item Value
gene id G950669
gene name LOC106578414
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18234892 ~ 18238442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1084053
TGGTTTGCAGATACAGTTTTTAATGTATCACAACAATGAGCAACAAACATACTTGATGAACTATTTCCAGAAGTTGTTCAAATACCATCTACAATAAACGTCATTTCAACTATGACAACAGGTCTgtgacaaaaataaaaaataaaagtttcaaaaccatgttattaccggTGTAACGGTACAGTTGAGACCTCAAACATTACAGTAACAAAAACTAATGAGACTACTCTCtatatataaaacatcaataacatTTTTGGTTTAGTTTATTTAAAGTTTTAGCCATAGGGGCTTCTTCTTAGTAAACCCTCAGGATGCATTTCCTATGTAACCAGGACAGAATACATATTGTGTAGGATATGACTGCGCCGTGAAATTCCCTTTTGACACCCAGAAGAAAACAATCCCAATATCAACCTTTTGAAGGCTGTCCTTTCTTTAGCGTGACACAATTCATCCGTTTGAAACaggtttttttttattctttctttctttttggcTGCTGTGCAGTTGCAACATTTATGTACAGTTCGTTATGTTATCGTACCATCCTTTTGGTTGTTGGTTTGTTAGCTTTTACCAGTCCTTTAGTGTGGGAAGCATTGTGTTTGCTGCTAACATCTTAGCACGTGATGCTAGCTGACAGTTCAGTCTGGCAATGCTTTAGCCACATTGAGGGGAAAGGCAAGAAGCCAGGTTGGGAAAGCCTTTGGGATCAGGACAGTCGTTGGTGTTTGTACAATGGCAGGATTGCACCTATACGGAGGCCAGGACGTCTCTTATGAAACACAATCGTAAAAGTGTCTTCAGGATCAAAGTAAATGTTAAAATACTAAAAATCcaaatcagaacatttaaaaagtttcacacaaaaaaaagagaATAAAAAACGGAGACATTTTGCATTTAAACTTTGAACGGAAAAACAAAAACACCTGTACTATAATAAAACGCAAGAGGAAATGTTACTGGATTTCATCGTTTGAAACAATAACTAAGCATGATTTGATTTTAACCTGTCAAACAGTTGCATTACATGCTACTTGTTCATCTCAGAATAGGAAATACCAAAAGCAATACAGTTTTGCATTTCTTCATATTAATAAATTTGTACCATGCACAGCCAACTACGAATATGTACAACAGCTTAGCTCTCTTTGTTCACAAGCCTTTTCCTTTCATACAAATAGCCTCTTGTTACTTTGGAATGAATCACATTGGTTTATCTTACCAAACTAGAAAGTGATTCGTAAAAATGTAACACCCTTTGACAGCTTTCACATTCTTTAAGTTCCACTGCAAATAAAAGAAGACCAAAacaaaatgaacatagaatgaaAACAGCATAGCAAAGCGATCCATGGGTCAGTATTCAGTCTGTTGGAGGATTTATGGCGAGCAAAAATAACATtacacagtagcagcaacattttgTTATAAGGTAATACTTCGTAATGCATAAACGTCTAAAATAAACTGAAGAATTAGTGTTGACTTTTCATGATTTATCAACTGAAGTGTCCGGAAAATGTATGCGAGGACGAAGAGCTATGCACCAAATGGCCGTGTATAGGTTTAACACTGTTATCAGTCCTACAAGCACTGTGGAAAACGTTTCGTTATATGAAATACATGCTGTAGTCACCCTTTTTAAAGCAGCATATTTCCGAATGCAAATATTCATACCTTTTGTTAAAAAAGATCAACATTTTGACCGACTTATACTTTAACAGTTTCAAGTATACCGTACTACTTTTATGGACGCACCAATTGTTAAATAGGTTACTGGGATGTTAGGCGTCAATCCTCTAACACGTGTGGACCAAAATGCTGCTGCaataaacacaaaataataattaaaacaaacaaacataccaACGGAAAAAAATCTATTAAATTAACACATGGGTCTACCAAAATAATATGACTAATAAAAAACgaacaaaaacaaaataagtgcactatagtCCAGACACAAGCAGGTACCATAACAGTACAGCAATTCACAAATGAAAAATGTCTTATTCACATAATTAATCCTCAAGAGTGTATAAAACTAGTTATTACCTCTTCAGAAAAGGGTGTGAGCAGAGATACATGAGAGAAGGTAAGAGTTGGCACAGATTAGTATATTCTACAAGAGAAAAAGAGGGTTGGATATAGACACAGTTTGTTGTAATACAAACTGGAAAACACAGGGGAATCATACACATATACTTCACCATTCTAAAATTCCCTCAGTGGCAAAACCATACTGTCTTTGTAGGGTGGAAACTAAAAGGATATGCACGCTGTCCATTGTAACAGTAATATTGTCTCTCTTGGTACTCTACACACATCAAGGAAATGCGTCCGATAAAGCTTGACATGTTTTGGTTAAAAGCCAAGTGTACCCAGGCTCGTTGCTGCTTTAACAAATGAGAAATGTTATGTTCTGACCTGAGAATTTAAAGCTACTGAATTACACCTATCTAGACTAAGAGAGATTCTCTTTGAGGGTTTTCTGGATCGTCATCCCATACAGTACATGCTAGCATTTGGAAAACAATCCAGCTGAGGTGCAATTTGCTATCATGAGTTTTTGGCTTGAAACAAGCTCCACGGGGGAGCCTGAGAGATCTTTTTCTACTCCGTGTTTTTGTATACAATATAAGCTCAGTCAAGCATCTGCAACAGTTCTGTCCATAACAAAAATCTATCAATATCTTGCCAGCATATCAATATGGGAAAAACAATCCTGAGTCAATCATTTGGTTCTGTAATTTTTTGGGTTAGAGAAACTTTGGAACTGCAGTTTAAAagtcttgtttttttattttattttttttaaagcaagggATCCTGTTTTTCACCTCCTACACACTGAACATATCCATTCTGATACTGCTGAAGCCTGCGTCTAAGCCGGAGGTTGGCTTAGCCTTGGCCTCCAACACCTTATCTAAGTCATCCAGCTTCTGGCTTAGCTCGTTGTCAGACTCATCTGAACAATTCTTGTTGGGTAGGGAGGTGGGAACCCCTGAGACGCTGCTGCAGGACGTTGAGGTAACCATTAGAGGCAaggaaaggggaggaagaggaagaggagaagcagacggggaggaggaggaagaagcagCTTTCCGGGCGGTGGCCTGGAAAAGGATATTTGGCCAGGACTTGATGGATaagcgagagagatggggaaaggtgTTATTAGAAGGAGGAGCTGCAGACTGCGAGGTAGATGTGGTGTTGACAGGAGTAGGTGTGCAGACAGAGTGAGGTAATAATCTAGCATGCTCTTTGGCATTTCTCATTGCTTGTTTGATTGTTTTCTCTTTGTGCAAGCTCGACTGGAGGTGTTGGCCAAGTGCTTCATTCCCGTTGACCACCACATTACAGGCGATGCACGTGTACTTGCTCACTGCCTGTCTAAGAACTGTCTCCTGCGGGTCTGGAAAGGGGTTTCCGAAGTAGCAGAATGACTTCTGGTGATGCACTGCGGAGCCCTCATCGCTGAATACCTTATGGCACTTCCTGCATATGAACTCGTGCTTGACAGATGGAAC
>TU1084049
ACAACAATGAGCAACAAACATACTTGATGAACTATTTCCAGAAGTTGTTCAAATACCATCTACAATAAACGTCATTTCAACTATGACAACAGGTCTgtgacaaaaataaaaaataaaagtttcaaaaccatgttattaccggTGTAACGGTACAGTTGAGACCTCAAACATTACAGTAACAAAAACTAATGAGACTACTCTCtatatataaaacatcaataacatTTTTGGTTTAGTTTATTTAAAGTTTTAGCCATAGGGGCTTCTTCTTAGTAAACCCTCAGGATGCATTTCCTATGTAACCAGGACAGAATACATATTGTGTAGGATATGACTGCGCCGTGAAATTCCCTTTTGACACCCAGAAGAAAACAATCCCAATATCAACCTTTTGAAGGCTGTCCTTTCTTTAGCGTGACACAATTCATCCGTTTGAAACaggtttttttttattctttctttctttttggcTGCTGTGCAGTTGCAACATTTATGTACAGTTCGTTATGTTATCGTACCATCCTTTTGGTTGTTGGTTTGTTAGCTTTTACCAGTCCTTTAGTGTGGGAAGCATTGTGTTTGCTGCTAACATCTTAGCACGTGATGCTAGCTGACAGTTCAGTCTGGCAATGCTTTAGCCACATTGAGGGGAAAGGCAAGAAGCCAGGTTGGGAAAGCCTTTGGGATCAGGACAGTCGTTGGTGTTTGTACAATGGCAGGATTGCACCTATACGGAGGCCAGGACGTCTCTTATGAAACACAATCGTAAAAGTGTCTTCAGGATCAAAGTAAATGTTAAAATACTAAAAATCcaaatcagaacatttaaaaagtttcacacaaaaaaaagagaATAAAAAACGGAGACATTTTGCATTTAAACTTTGAACGGAAAAACAAAAACACCTGTACTATAATAAAACGCAAGAGGAAATGTTACTGGATTTCATCGTTTGAAACAATAACTAAGCATGATTTGATTTTAACCTGTCAAACAGTTGCATTACATGCTACTTGTTCATCTCAGAATAGGAAATACCAAAAGCAATACAGTTTTGCATTTCTTCATATTAATAAATTTGTACCATGCACAGCCAACTACGAATATGTACAACAGCTTAGCTCTCTTTGTTCACAAGCCTTTTCCTTTCATACAAATAGCCTCTTGTTACTTTGGAATGAATCACATTGGTTTATCTTACCAAACTAGAAAGTGATTCGTAAAAATGTAACACCCTTTGACAGCTTTCACATTCTTTAAGTTCCACTGCAAATAAAAGAAGACCAAAacaaaatgaacatagaatgaaAACAGCATAGCAAAGCGATCCATGGGTCAGTATTCAGTCTGTTGGAGGATTTATGGCGAGCAAAAATAACATtacacagtagcagcaacattttgTTATAAGGTAATACTTCGTAATGCATAAACGTCTAAAATAAACTGAAGAATTAGTGTTGACTTTTCATGATTTATCAACTGAAGTGTCCGGAAAATGTATGCGAGGACGAAGAGCTATGCACCAAATGGCCGTGTATAGGTTTAACACTGTTATCAGTCCTACAAGCACTGTGGAAAACGTTTCGTTATATGAAATACATGCTGTAGTCACCCTTTTTAAAGCAGCATATTTCCGAATGCAAATATTCATACCTTTTGTTAAAAAAGATCAACATTTTGACCGACTTATACTTTAACAGTTTCAAGTATACCGTACTACTTTTATGGACGCACCAATTGTTAAATAGGTTACTGGGATGTTAGGCGTCAATCCTCTAACACGTGTGGACCAAAATGCTGCTGCaataaacacaaaataataattaaaacaaacaaacataccaACGGAAAAAAATCTATTAAATTAACACATGGGTCTACCAAAATAATATGACTAATAAAAAACgaacaaaaacaaaataagtgcactatagtCCAGACACAAGCAGGTACCATAACAGTACAGCAATTCACAAATGAAAAATGTCTTATTCACATAATTAATCCTCAAGAGTGTATAAAACTAGTTATTACCTCTTCAGAAAAGGGTGTGAGCAGAGATACATGAGAGAAGGTAAGAGTTGGCACAGATTAGTATATTCTACAAGAGAAAAAGAGGGTTGGATATAGACACAGTTTGTTGTAATACAAACTGGAAAACACAGGGGAATCATACACATATACTTCACCATTCTAAAATTCCCTCAGTGGCAAAACCATACTGTCTTTGTAGGGTGGAAACTAAAAGGATATGCACGCTGTCCATTGTAACAGTAATATTGTCTCTCTTGGTACTCTACACACATCAAGGAAATGCGTCCGATAAAGCTTGACATGTTTTGGTTAAAAGCCAAGTGTACCCAGGCTCGTTGCTGCTTTAACAAATGAGAAATGTTATGTTCTGACCTGAGAATTTAAAGCTACTGAATTACACCTATCTAGACTAAGAGAGATTCTCTTTGAGGGTTTTCTGGATCGTCATCCCATACAGTACATGCTAGCATTTGGAAAACAATCCAGCTGAGGTGCAATTTGCTATCATGAGTTTTTGGCTTGAAACAAGCTCCACGGGGGAGCCTGAGAGATCTTTTTCTACTCCGTGTTTTTGTATACAATATAAGCTCAGTCAAGCATCTGCAACAGTTCTGTCCATAACAAAAATCTATCAATATCTTGCCAGCATATCAATATGGGAAAAACAATCCTGAGTCAATCATTTGGTTCTGTAATTTTTTGGGTTAGAGAAACTTTGGAACTGCAGTTTAAAagtcttgtttttttattttattttttttaaagcaagggATCCTGTTTTTCACCTCCTACACACTGAACATATCCATTCTGATACTGCTGAAGCCTGCGTCTAAGCCGGAGGTTGGCTTAGCCTTGGCCTCCAACACCTTATCTAAGTCATCCAGCTTCTGGCTTAGCTCGTTGTCAGACTCATCTGAACAATTCTTGTTGGGTAGGGAGGTGGGAACCCCTGAGACGCTGCTGCAGGACGTTGAGGTAACCATTAGAGGCAaggaaaggggaggaagaggaagaggagaagcagacggggaggaggaggaagaagcagCTTTCCGGGCGGTGGCCTGGAAAAGGATATTTGGCCAGGACTTGATGGATaagcgagagagatggggaaaggtgTTATTAGAAGGAGGAGCTGCAGACTGCGAGGTAGATGTGGTGTTGACAGGAGTAGGTGTGCAGACAGAGTGAGGTAATAATCTAGCATGCTCTTTGGCATTTCTCATTGCTTGTTTGATTGTTTTCTCTTTGTGCAAGCTCGACTGGAGGTGTTGGCCAAGTGCTTCATTCCCGTTGACCACCACATTACAGGCGATGCACGTGTACTTGCTCACTGCCTGTCTAAGAACTGTCTCCTGCGGGTCTGGAAAGGGGTTTCCGAAGTAGCAGAATGACTTCTGGTGATGCACTGCGGAGCCCTCATCGCTGAATACCTTATGGCACTTCCTGCATATGAACTCGTGCTTGACAGATGGAAC

Function

NR:

description
zinc finger homeobox protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1084053 False 3551 lncRNA 0.39 1 18234892 18238442
TU1084049 True 3522 lncRNA 0.39 1 18234921 18238442

Neighbor

gene id symbol gene type direction distance location
pex2 pex2 coding upstream 30739 18192624 ~ 18204153 (+)
hnf4g hnf4g coding upstream 252995 17960186 ~ 17981897 (+)
LOC110535422 LOC106578412 coding upstream 274892 17949429 ~ 17960000 (+)
pign pign coding upstream 289688 17926634 ~ 17945204 (+)
tpk1 NA coding upstream 445571 17709687 ~ 17789321 (+)
LOC110535429 nup58 coding downstream 551728 18790170 ~ 18802871 (+)
ankrd33ba LOC106578420 coding downstream 583892 18822334 ~ 18844891 (+)
LOC110535436 LOC106578460 coding downstream 1060137 19298579 ~ 19310732 (+)
LOC110535438 NA coding downstream 1091539 19329981 ~ 19335648 (+)
ssm4 ssm4 coding downstream 1103539 19341981 ~ 19345685 (+)
G950708 NA non-coding upstream 24221 18210406 ~ 18210671 (+)
G950706 NA non-coding upstream 28288 18206355 ~ 18206604 (+)
G950673 NA non-coding upstream 79461 18154103 ~ 18155431 (+)
G950378 NA non-coding upstream 276030 17956687 ~ 17958862 (+)
G950761 NA non-coding downstream 78157 18316599 ~ 18317453 (+)
G950787 NA non-coding downstream 121590 18360032 ~ 18369456 (+)
G951103 NA non-coding downstream 217159 18455601 ~ 18455904 (+)
G951129 NA non-coding downstream 237284 18475726 ~ 18476057 (+)
G951135 NA non-coding downstream 242624 18481066 ~ 18481766 (+)
G948710 NA other upstream 1633000 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 1689603 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1899600 16327393 ~ 16338373 (+)
G948587 NA other upstream 1908485 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 2024052 16209929 ~ 16211192 (+)
G951511 NA other downstream 888223 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 1522823 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 4488111 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 5426846 23665288 ~ 23665930 (+)
G956797 NA other downstream 5537330 23775772 ~ 23776845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G34514 NA non-coding CM030124.1 CM030124.1 23610429 ~ 23642241 (-)