G951225


Basic Information

Item Value
gene id G951225
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18562338 ~ 18595492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1084690
GTTTATTCCTTCCACAACAATAGGCTCTTCACTAGCTCAAGATAGTAGCTCTGAGATAGGTACAAGCCTTGCCTCAAATGTCCCTACTGGATTATATACCACTGGCAACATTTTCCTCATGCTAAAACACCCGCGTGAACAGTGCAACTAAATCTCTGGTTAATCTACAGAGTTTGCAGTGCGTTATCTAACAGGTATATTTGCGACAAGAAAatggtcctggagagctactgaaTGAGCAGTCTTTTGTTCCAGCTAGGAGTCTaacatactcccgtaGTACtataccattctcccatagtagtctaccatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactctcgTAGTAGTCTACCATCTCACAAAGTGGTTTACCATcctcccatagcagtctaccattctcccataatagtctaccattctcccatagtagtctaccatcctcccatagcagtctaccattctcccataataGTGGACCATtatcccatagtagtctaccattatcCTATaatagtctaccattctccctttgcagtctaccatcctcccatagtagtctaccatcctcccatagtagtctaccattctcccatagtagtctactaTTCTCCCATAATAGTGGACCATTATCCCATAGTAGTCTTCCATTATcctatagtagtctaccattataccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccatagcagtctaccatactcccatagcagtctaccattctcccatagtagtctaccatactcccatagttgtctacaatactcccatagtagtctaccatactcccgtagtagtctaccattatcccatagcagtctaccattctcccatagtagtctaccattctcccatagcagtctaccattctcccatagtagtctaccattctcccatagtagtttaccgtactcccatagtagtctacactCTCCCATAGTACTCTatcatactcccatagtagtctaccattctcccatagtagtctaccattcttccatagcagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccattctcccatagtagtctaccatactctcgTAGTAGTCTACCATCTcacatagtagtctaccattctcccatagtagtctaccatactctcgTAGTAGTCTACCATCTCACATAGTGGTTTACCATcctcccatagcagtctaccattctcccataatagtctaccattctcccatagtactctaccattctcccatagtagtctacaatactcccatagtagtctaccatactcccgtagtagtctaccattatcccatagtagtctaccatactcctgTAGTACTCTACAATAatcccatagcagtctaccattctcccatagtagtctaccatactctcgtagtagtctaccatcctcccatagcagtctaccattctcccataataGTGGactattctcccatagtagtctaccattctcccatcgTAGTCTTCCATTcccccatagtagtctaccattctcccatattggtttaccatcctcccatagcagtctaccattctcccataataGTGGactattctcccatagtagtctaccatcctcccatagtagtctaccattatcCCACAGTAGTCTACCATTATCCTATAGTAGTCTACCGTTCTCCCTTTGCAGTCTACCatcctcccatagtagtctaccattctcccatagtagtctacactctcccatagtagtctaccatacttccatagtagtctaccaattctcccatagcagtctaccattctctgatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccatagcagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgtctacaatactcccatagtagtctaccatactcccgtagtagtctaccattatcccatagcagtctaccattctcccatagtagtctaccatcctcccatagcagtctaccattctcccataataGTGGactattctcccatagtagtctaccattctcccatcgTAGTCTTCCATTcccccatagtagtctaccattctcccatat
>TU1084692
GTTTATTCCTTCCACAACAATAGGCTCTTCACTAGCTCAAGATAGTAGCTCTGAGATAGGTACAAGCCTTGCCTCAAATGTCCCTACTGGATTATATACCACTGGCAACATTTTCCTCATGCTAAAACACCCGCGTGAACAGTGCAACTAAATCTCTGGTTAATCTACAGAGTTTGCAGTGCGTTATCTAACAGGTATATTTGCGACAAGAAAatggtcctggagagctactgaaTGAGCAGTCTTTTGTTCCAGCTAGGAGTCTaacatactcccgtaGTACtataccattctcccatagtagtctaccatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactctcgTAGTAGTCTACCATCTCACAAAGTGGTTTACCATcctcccatagcagtctaccattctcccataatagtctaccattctcccatagtagtctaccatcctcccatagcagtctaccattctcccataataGTGGACCATtatcccatagtagtctaccattatcCTATaatagtctaccattctccctttgcagtctaccatcctcccatagtagtctaccatactcccatagtagtctatcatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACAATactcccatagcagtctaccattctcccatagtagtctaacatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACACTactcccatagcagtctaccattctcccatagtagtgtACCATTCCCCCATAGTAGTTTACCATACTCCCTTAGTAGTGTACCATTCTCCcttagtagtctaccattctcccatagtagtctaccattatcctatagtagtctaccattctccctttgcagtctaccatactcccatagttgTCTACCATACTctcatagtagtctaccattctcccatagtagtttCCCATcctcccatagcagtctaccattctcccatattAGTGGactattctcccatagtagtctaccatcctcccatagtagtctaccattatcctatagtagtctaccattctccctttgcagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACACTactcccatagcagtctaccattctcccatagtagtgtACCATTCCCCCATAGTAGTTTACCATACTCCCTTAGTAGTGTACCATTCTCCcttagtagtctaccattctcccatagtagtctaccattctcctatAGTAGTCTACCATGCTCCCATAATAGTTGactattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagcagtctaccattatcctttagtagtctaccattctcccttTGTAGTCTACTATCCTCCCATAGTAGtttaccattctcccatagtagtctactaTTCTcctatagtagtctaccattctcccattgTTGTCTACGATCCTCCCATAGTAGTGTACCATTATCCCTTAGTAGTCTCCCATtctcccatagcagtctaccattctcccatagtagtttaCCTTGCTCCCTTAGTAGTGTACCA
>TU1084684
ccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACAATACTCCCATAGTATTCTACCATACTCCCGTAGTAGTCTACCATTatcccatagcagtctaccattctcccatagtagtctaccattctcccatagcagtctaccattctcccatagtagtctaccattctcccatagtagtttaccgtactcccatagtagtctacactCTCCCATAGTACTCTatcatactcccatagtagtctaccattctcccgtagtagtctaccattcttccatagcagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccagagtagtctaccatactcccgtagtagtctaccattctcccatagtagtctaccattctcccatagtagtctaccattctcccatagtagtttaccatactcccatagtagtctacactctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccattcttcaaatgcagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagtagtctaccagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactaccattctcccatagtagtctactattctcccatagtagtataccatactcccatagtagtgtACCATTCTcctatagtagtctaccatactcccatagtagtctaccattctcccatcgTAGTCTACCATTcccccatagtagtctaccattctcccatagtagtctaccaattctcccatagcagtctaccattctctgatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccatagtagtctatcatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACAATactcccatagcagtctaccattctcccatagtagtctaacatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaacaCACTctcatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACAATACTCCaatagcagtctaccattctcccatagtagtctaccattctcccatagtagtctaccattctcccatagtagtttaccatactcccatagtagtctacactctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccattcttccatagcagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccattcctctatagcagtctaccattctcccatagtagtctaccatcctcccatagtagtctaccattctcccataataGTGGactattctcccatagtagtctaccagtctaccattctcccatagtagtctaacatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaacaCACTctcatagtagtctaccATACTCCaatagcagtctaccattctcccatagtagtctaccattctcccatagtagtctaccattctcccatagtagtttaccatactcccatagtagtctacactctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccattcttccatagcagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccattcctctatagcagtctaccattatcccatagtagtctaccatcctcccatagtagtctaccattctcccataataGTGGactattctcccatagtagtctaccagtctaccattttcccatagtagtctaccattcttccatagtagtctaccattctctgatagtagtctaccatactcccatagtagtctaccattctcccttagtagtctaccatactctcatagtagtctaccattctcccatagtagtttaccatcctcccatagcagtctaccattctcccatattAGTGGactattctcccatagtagtctaccatcctcccatagtagtctaccattctcccatagtagtctaccattatcctatagtagtctaccattctccctttgcagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccatagtagtctaccattctcccatagtagtctaccattctcccatagtagtttaccatactcccatagtagtctacactctcccatagtagtctaccatactcccatagtagtctaccattatcctatagtagtctaccattctccctttgcagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccacagtagtctaccattctcccatagtagtctaccattctcccatagtagt
>TU1084693
tagtagtctaccattctcccatagtagtctaccattctcctatagtagtctaccatactcccataatAGTGGactattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagcagtctaccattatcctttagtagtctaccattctcccttTGTAGTCTACTATCCTCCCATAGTAGtttaccattctcccatagtagtctactaTTCTcctatagtagtctaccattctcccattgTTGTCTACGATCCTCCCATAGTAGTGTACCATTATCCCTTAGTAGTCTCCCATtctcccatagcagtctaccattctcccatagtagtttaCCTTGCTCCCTTAGTAGTGTACCA
>TU1084686
cccatagtagtctaccatcctcccatagtagtctaccattctcccataataGTGGactattctcccatagtagtctaccagtctaccattctcccatagtagtctaccattcttccatagtagtctaccattctctgatagtagtctaccatactcccatagtagtctaccattctcccttagtagtctaccatactctcatagaagtctaccattctcccatagtagtttaccatcctcccatagcagtctaccatttTCCCATATTAGTGGactattctcccatagtagtctaacatactcccatagtagtctaccatactctcATAGAAGTCTACCATTATcctatagtagtctaccattctccctttgcagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACACTactcccatagcagtctaccattctcccatagtagtgtACCATTCCCCCATAGTAGTTTACCATACTCCCTTAGTAGTGTACCATTCTCCcttagtagtctaccattctcccatagtagtctaccattatcctatagtagtctaccattctccctttgcagtctaccatactcccatagttgTCTACCATACTctcatagtagtctaccattctcccatagtagtttCCCATcctcccatagcagtctaccattctcccatattAGTGGactattctcccatagtagtctaccatcctcccatagtagtctaccattatcctatagtagtctaccattctccctttgcagtctaccatactcccatagtagtctaccattctcccatagtagtctaacatactcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagtagtctaccattctcccatagtagtctaccatactcccatagttgTCTACACTactcccatagcagtctaccattctcccatagtagtgtACCATTCCCCCATAGTAGTTTACCATACTCCCTTAGTAGTGTACCATTCTCCcttagtagtctaccattctcccatagtagtctaccattctcctatagtagtctaccatactcccataagAGTGCactattctcccatagtagtctaccatactcccatagtagcctaccattctcccatagtagtttaCCATTATcctatagtagtctaccattctcccttTGTAGTCTACTATCCTCCCATAGTAGtttaccattctcccatagtagtctactaTTCTcctatagtagtctaccattctcccattgTTGTCTACGATCCTCCCATAGTAGTGTACCATTATCCCTTAGTAGTCTCCCATtctcccatagcagtctaccattctcccatagtagtttaCCTTGCTCCCTTAGTAGTGTACCA

Function

NR:

description
PREDICTED: mucin-19-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1084690 False 2250 lncRNA 0.43 2 18562338 18564608
TU1084692 False 1801 lncRNA 0.42 6 18562338 18595492
TU1084684 False 2831 lncRNA 0.42 3 18579979 18583372
TU1084693 False 370 lncRNA 0.42 3 18585893 18595492
TU1084686 True 1495 lncRNA 0.42 3 18592613 18595492

Neighbor

gene id symbol gene type direction distance location
pex2 pex2 coding upstream 358185 18192624 ~ 18204153 (+)
hnf4g hnf4g coding upstream 580441 17960186 ~ 17981897 (+)
LOC110535422 LOC106578412 coding upstream 602338 17949429 ~ 17960000 (+)
pign pign coding upstream 617134 17926634 ~ 17945204 (+)
tpk1 NA coding upstream 773017 17709687 ~ 17789321 (+)
LOC110535429 nup58 coding downstream 194678 18790170 ~ 18802871 (+)
ankrd33ba LOC106578420 coding downstream 226842 18822334 ~ 18844891 (+)
LOC110535436 LOC106578460 coding downstream 703087 19298579 ~ 19310732 (+)
LOC110535438 NA coding downstream 734489 19329981 ~ 19335648 (+)
ssm4 ssm4 coding downstream 746489 19341981 ~ 19345685 (+)
G951184 NA non-coding upstream 36019 18526050 ~ 18526319 (+)
G951135 NA non-coding upstream 80572 18481066 ~ 18481766 (+)
G951129 NA non-coding upstream 86281 18475726 ~ 18476057 (+)
G951103 NA non-coding upstream 106434 18455601 ~ 18455904 (+)
G950787 NA non-coding upstream 192882 18360032 ~ 18369456 (+)
G951270 NA non-coding downstream 54084 18649576 ~ 18677028 (+)
G951277 tlr13 non-coding downstream 121937 18717429 ~ 18727093 (+)
G951340 NA non-coding downstream 216916 18812408 ~ 18812766 (+)
G951335 NA non-coding downstream 249864 18845356 ~ 18845789 (+)
G948710 NA other upstream 1960446 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 2017049 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 2227046 16327393 ~ 16338373 (+)
G948587 NA other upstream 2235931 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 2351498 16209929 ~ 16211192 (+)
G951511 NA other downstream 531173 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 1165773 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 4131061 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 5069796 23665288 ~ 23665930 (+)
G956797 NA other downstream 5180280 23775772 ~ 23776845 (+)

Expression


Co-expression Network