XLOC_002864 (uvrag)


Basic Information

Item Value
gene id XLOC_002864
gene name uvrag
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32264857 ~ 32494499 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005300
ACGCGAGGGTTTGCCGATCAAGGTCGCGGTAATGGCTTCCTCCTAGGCAGGACTTACTTTGTTTATATCGCCGCTGGGACCCAAGCAGTCGTGTTTAAGCGTGCTTATAGTGCTTTTTACTATACATCTGCACATTTTGGGAAGCATATTTGGACTGGGACAGTATCCTATTTAGTCGCCTATTGGGCTGAGCTGTGTTGACTGAATGACGGGATAGCTTGTAGTACCGTAAAAGGATGAACTCCATCGCCGGTCGGGATCTCTCGGTGTCCGCGGGATCTGTCAGCGGCAACCCCGGAGCGACATCTTCCAGAGTCCTGCATGTGGAGCTCACATCACAACAGAGGCGTTTGCGTCACTTGCGGAGCATAGCAGCCCGTAACATTGTGAACAAGAATGGCTCTCCTCTGCTTGACACTTACTTCACCCTCCACCTCTGCCAGGATGATCAGATATCACGAGATTTTTACAAGAGTGAAGTCATCCGAGACTCATTGaaTCCAACATGGCGGAGCTTAGATTTTGCCATGCTGCCAGACCTCCTGGACACGTCGGTTTCTTgttttgtggtgagaatatgggGTGGGAGAGAAGAACACTACCAACTGCTTATTGAGTGGAAAGTCAACCTAGATGGTCTCCGATTCACAGGACAGCAGATTCGCTCCAGAAATCCGAATGAGATCATCTTTGGACTGAACGATGGCTACTATGCAGCTGAGTTCGATCAGAAGGAGAGTTCAGACCGGAGGAAGAACAGTTTGCTTCAGGTGACTGTTCAGAAGATTGGGAAGGAAATTGAAGAGAAACTGAGGACAACAGCGTCCTGCACGGAAAAGAAGAAGGAAAGGGAGTGCATGCAGCTGCGCATTGGGATTCTGAGGTGTGAGTTGGAGAGACAGAAGAAGGCACTGACGAGAGAAATGGACGTGATGCAGAAAGAGAGAGCACAGCTTATTAAGAAAGAAGAGGCGTCATCCACCAAACAGCAGGATCTGGAGTCTGAACGCACCACTTTGACCGACCTGCAGAAGGAATGCACCGCCAAAAGAGAGCTGTTTCTAAAGTCTAAAGCCCAGCTCACCTTCCGCTGCCGGCAGCTCATATCAGAGCTTTCCTACATTTATCCCATTGATGTGAACAATCAGAACGATTATGTGATTTGTGGCGTCAAATTGCCCAATTCTGAAGACTTTCAAGCAAAGGATGATGGGAGTATTGCAGTGGCTCTTGGCTACACGGCACACCTGGTGTTGATGATTTCATGCTTCCTGCAGATTCCGCTCAGGTATCCAGTCATCCACAAGGGTTCCCGCTCCACTATTAAAGACACCATCACTGACAAACTcacagagaaggagagagaGTTCCCTCTTTACCCCAGAGGAGAGCGCTTCCAGTTTGAATATGGTGTCTATTTGCTCAACAAGAACATCGCCCAGTTGAGGTATCAGCATGGACTCTCCACACCGGACCTGCGGCAGACTTTACCCAACTTGAAGAACTTCCTAGAGCATGGGCTGCTCGTACGATGCGACAGGCACCATGCCTCCATGTCCATCCCCGTCCCTCTGAAGTCTCATCTCAGCGTTTCCACCGCATCCGAAGTGGGATTTCCGGCTCTCTCCAGTTCTCCTGAACAGGATGTCCGGAGGCGGGCTGCTTCAGATGCGGATAAACAGAAATGCCGAACACCTCCGCCTAGTTACAACACCGCCATGGCTCAACCTGATCCCATGACCACTCCGGAGCTTCAGTCAGAGCCATCTGTTGAGGTATTGGAAGTAGGTAAGGCTGTGGAAACACTTGAGGATGGAGAAACTGTGTCAGAGGAACATCCAGAGAAACCTTTGGATGTTCCTACTGATATAGTTAGTACATTACCATCCGACTCCATCCCTCAGCACCCAGGGGCGATGAATGGTTCTGCTGTGCCCACCAGTGGGGGTGTGGGATTGGGCGTTGCGAGTGGAGGAGAGGTATGCTGCTCAGTGGAGCAAGCGGAGGAGATTATGGGCACTGAAGCTACAGGATTGGGATTGGGGTTGGGAGGTGGCGCCAGACTGGACGATTACCCCTGCATCCCAGTGGAGCACGCAGTAGCGGTTGAGTGTGATGAACAGGTTTTGGGAGAGTTTGACGCCGCTGGGATTGAAGAGGTCTCACGGCGCATCTATGCACTAGAAAACATGTCGAGCTTTCGACGACCACGGAAGAACTCGGAAAAGTGATGTGGATGTAGAGCGCGGAGCAACTGGTTGAGCTGCAGGATATTTCACCTCAACCACAAGTATAGATATTGCATAAAGAAATATATGATtaatgttgttataattattaacGTTATTAGGAAAAATCCAGATTATTGACCAATTTGCACTTCTCAAAGCATTTCTATAATCCTTTCAAGTCAAATAAAGAGAATGTTTGTGGTTAAA
>TCONS_00005301
CGTTGAGATCACGTTACTCAAACACGTCCCCCTCACTTCCTCATATTTGTACGAACACAGCGCAGCGTGAGTTTCTAAAGGCCTCCTCCCGCCCCTTTCCCTGTGATCGACAAGCCCAACACCAATCGACCGAGATTATTCTTTAACGTCACCAAACATCTCTTTTATTGACAGCTTCCTCAGCCAATGGGCGTCACGCGAGGGTTTGCCGATCAAGGTCGCGGTAATGGCTTCCTCCTAGGCAGGACTTACTTTGTTTATATCGCCGCTGGGACCCAAGCAGTCGTGTTTAAGCGTGCTTATAGTGCTTTTTACTATACATCTGCACATTTTGGGAAGCATATTTGGACTGGGACAGTATCCTATTTAGTCGCCTATTGGGCTGAGCTGTGTTGACTGAATGACGGGATAGCTTGTAGTACCGTAAAAGGATGAACTCCATCGCCGGTCGGGATCTCTCGGTGTCCGCGGGATCTGTCAGCGGCAACCCCGGAGCGACATCTTCCAGAGTCCTGCATGTGGAGCTCACATCACAACAGAGGCGTTTGCGTCACTTGCGGAGCATAGCAGCCCGTAACATTGTGAACAAGAATGGCTCTCCTCTGCTTGACACTTACTTCACCCTCCACCTCTGCCAGGATGATCAGATATCACGAGATTTTTACAAGAGTGAAGTCATCCGAGACTCATTGaaTCCAACATGGCGGAGCTTAGATTTTGCCATGCTGCCAGACCTCCTGGACACGTCGGTTTCTTgttttgtggtgagaatatgggGTGGGAGAGAAGAACACTACCAACTGCTTATTGAGTGGAAAGTCAACCTAGATGGTCTCCGATTCACAGGACAGCAGATTCGCTCCAGAAATCCGAATGAGATCATCTTTGGACTGAACGATGGCTACTATGCAGCTGAGTTCGATCAGAAGGAGAGTTCAGACCGGAGGAAGAACAGTTTGCTTCAGGTGGACCAGAGCTCTGTCAGAAACTCCTACAGTGTTTTCTCTTTGCTGAGGCTGCGCATGGCCCAGAGAGCCATCAAGCAGACTCAGGTGACTGTTCAGAAGATTGGGAAGGAAATTGAAGAGAAACTGAGGACAACAGCGTCCTGCACGGAAAAGAAGAAGGAAAGGGAGTGCATGCAGCTGCGCATTGGGATTCTGAGGTGTGAGTTGGAGAGACAGAAGAAGGCACTGACGAGAGAAATGGACGTGATGCAGAAAGAGAGAGCACAGCTTATTAAGAAAGAAGAGGCGTCATCCACCAAACAGCAGGATCTGGAGTCTGAACGCACCACTTTGACCGACCTGCAGAAGGAATGCACCGCCAAAAGAGAGCTGTTTCTAAAGTCTAAAGCCCAGCTCACCTTCCGCTGCCGGCAGCTCATATCAGAGCTTTCCTACATTTATCCCATTGATGTGAACAATCAGAACGATTATGTGATTTGTGGCGTCAAATTGCCCAATTCTGAAGACTTTCAAGCAAAGGATGATGGGAGTATTGCAGTGGCTCTTGGCTACACGGCACACCTGGTGTTGATGATTTCATGCTTCCTGCAGATTCCGCTCAGGTATCCAGTCATCCACAAGGGTTCCCGCTCCACTATTAAAGACACCATCACTGACAAACTcacagagaaggagagagaGTTCCCTCTTTACCCCAGAGGAGAGCGCTTCCAGTTTGAATATGGTGTCTATTTGCTCAACAAGAACATCGCCCAGTTGAGGTATCAGCATGGACTCTCCACACCGGACCTGCGGCAGACTTTACCCAACTTGAAGAACTTCCTAGAGCATGGGCTGCTCGTACGATGCGACAGGCACCATGCCTCCATGTCCATCCCCGTCCCTCTGAAGTCTCATCTCAGCGTTTCCACCGCATCCGAAGTGGGATTTCCGGCTCTCTCCAGTTCTCCTGAACAGGATGTCCGGAGGCGGGCTGCTTCAGATGCGGATAAACAGAAATGCCGAACACCTCCGCCTAGTTACAACACCGCCATGGCTCAACCTGATCCCATGACCACTCCGGAGCTTCAGTCAGAGCCATCTGTTGAGGTATTGGAAGTAGGTAAGGCTGTGGAAACACTTGAGGATGGAGAAACTGTGTCAGAGGAACATCCAGAGAAACCTTTGGATGTTCCTACTGATATAGTTAGTACATTACCATCCGACTCCATCCCTCAGCACCCAGGGGCGATGAATGGTTCTGCTGTGCCCACCAGTGGGGGTGTGGGATTGGGCGTTGCGAGTGGAGGAGAGGTATGCTGCTCAGTGGAGCAAGCGGAGGAGATTATGGGCACTGAAGCTACAGGATTGGGATTGGGGTTGGGAGGTGGCGCCAGACTGGACGATTACCCCTGCATCCCAGTGGAGCACGCAGTAGCGGTTGAGTGTGATGAACAGGTTTTGGGAGAGTTTGACGCCGCTGGGATTGAAGAGGTCTCACGGCGCATCTATGCACTAGAAAACATGTCGAGCTTTCGACGACCACGGAAGAACTCGGAAAAGTGA
>TCONS_00005302
CTTAGATTTTGCCATGCTGCCAGACCTCCTGGACACGTCGGTTTCTTgttttgtggtgagaatatgggGTGGGAGAGAAGAACACTACCAACTGCTTATTGAGTGGAAAGTCAACCTAGATGGTCTCCGATTCACAGGACAGCAGATTCGCTCCAGAAATCCGAATGAGATCATCTTTGGACTGAACGATGGCTACTATGCAGCTGAGTTCGATCAGAAGGAGAGTTCAGACCGGAGGAAGAACAGTTTGCTTCAGGTGGACCAGAGCTCTGTCAGAAACTCCTACAGTGTTTTCTCTTTGCTGAGGCTGCGCATGGCCCAGAGAGCCATCAAGCAGACTCAGGTGACTGTTCAGAAGATTGGGAAGGAAATTGAAGAGAAACTGAGGACAACAGCGTCCTGCACGGAAAAGAAGAAGGAAAGGGAGTGCATGCAGCTGCGCATTGGGATTCTGAGGTGTGAGTTGGAGAGACAGAAGAAGGCACTGACGAGAGAAATGGACGTGATGCAGAAAGAGAGAGCACAGCTTATTAAGAAAGAAGAGGCGTCATCCACCAAACAGCAGGATCTGGAGTCTGAACGCACCACTTTGACCGACCTGCAGAAGGAATGCACCGCCAAAAGAGAGCTGTTTCTAAAGTCTAAAGCCCAGCTCACCTTCCGCTGCCGGCAGCTCATATCAGAGCTTTCCTACATTTATCCCATTGATGTGAACAATCAGAACGATTATGTGATTTGTGGCGTCAAATTGCCCAATTCTGAAGACTTTCAAGCAAAGGATGATGGGAGTATTGCAGTGGCTCTTGGCTACACGGCACACCTGGTGTTGATGATTTCATGC

Function

symbol description
uvrag Predicted to enable SNARE binding activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in endosome and lytic vacuole. Orthologous to human UVRAG (UV radiation resistance associated).

GO:

id name namespace
GO:0035493 SNARE complex assembly biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0005768 endosome cellular_component
GO:0000323 lytic vacuole cellular_component
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko04140 Autophagy - animal
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-924 Predicted to enable SNARE binding activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in endosome and lytic vacuole. Orthologous to human UVRAG (UV radiation resistance associated).

Ensembl:

ensembl_id ENSDARG00000023815

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005300 False 2438 mRNA 0.49 15 32264857 32494304
TCONS_00005301 False 2513 mRNA 0.51 15 32265064 32494499
TCONS_00005302 True 841 mRNA 0.48 9 32383577 32465462

Neighbor

gene id symbol gene type direction distance location
XLOC_002863 NA coding downstream 14011 32216413 ~ 32250846 (-)
XLOC_002862 NA coding downstream 180233 32077811 ~ 32084624 (-)
XLOC_002861 vps26bl coding downstream 458934 31800212 ~ 31805923 (-)
XLOC_002860 fez1 coding downstream 482241 31738501 ~ 31782616 (-)
XLOC_002859 robo3 coding downstream 701808 31298972 ~ 31563049 (-)
XLOC_002865 dgat2 coding upstream 7462 32501961 ~ 32524771 (-)
XLOC_002866 mogat2 coding upstream 40315 32534814 ~ 32610776 (-)
XLOC_002867 NA coding upstream 90186 32584685 ~ 32591462 (-)
XLOC_002868 umodl1 coding upstream 119207 32613706 ~ 32639941 (-)
XLOC_002869 atg101 coding upstream 162997 32657496 ~ 32663759 (-)
XLOC_002858 NA non-coding downstream 969851 31262852 ~ 31295006 (-)
XLOC_002854 CT737197.1 non-coding downstream 1733600 30531143 ~ 30531257 (-)
XLOC_002845 CU861448.1 non-coding downstream 2556675 29708068 ~ 29708182 (-)
XLOC_002870 NA non-coding upstream 182311 32676810 ~ 32678245 (-)
XLOC_002871 NA non-coding upstream 285381 32779880 ~ 32780290 (-)
XLOC_002875 NA non-coding upstream 400498 32894997 ~ 32896944 (-)
XLOC_002877 NA non-coding upstream 664090 33158589 ~ 33164573 (-)

Expression


Co-expression Network