XLOC_028641


Basic Information

Item Value
gene id XLOC_028641
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14346867 ~ 14360848 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058141
CTCACCACTCGTCCAGTGTGCCTCTCTATGGCTTTCTTCACTTTTCCATATGTTCCTCTCCCGAGGGTCTCGAGCAGCTCGTAGCGGTGCTTCAGGTTGTGTTTATGGTGATGTTTCTTGACGCTGGACCCTCTCCGCACACCGAGAGAGGCTGGCATCTCTCCTCCCGGAAAGTCCACCGGTAGAAGATCACTTTCGTTTGCTCCGTTACTCCCCAACTGGGACGATTCAGTCTCCATGGTCTCAGGGATGCTCGGTAAATTTTAAAATCGGCGGTGAGCCGCTAGATAAACTCCCAGATATCCCGAACTGACTGTTCAGTCGTCAATTAAGCTATAGGGATGCGTCTGAAAGGAGAGAGACGCGTCAGTCATTCGCTCTGTGTCAGGATGCGCTCTTCTCGCCTCTGGCAGCTCAAATATGCGCGAGCGACTCCATGCTTCAGCCGTCCATCCCACCGCCGGCGCGTGTCCCTCCTCCCTCCGCTTCCCTTTCTCCAGAGTAAAATCTACAGGAATCAAGAATGCAGCATGCATGAAGCCGGAGGCGGAGTTATAGGCGAAGAGAGATATCCACGGAATAAGACGAGAGGAAGAGGGAGAGAAGATGAGGTGAACCATCAAACTTCGATTCCAACCGGGCCTTGTTACTGCTGAAGCTGTTGAAGTCCTGCTGGTGGGCCATACTCTGGTGAAGCTGAAACAGAGGGTCCCTCCAGGCCAGAAGCAGCTTGAGGATCACCTCCGTCAACTCCTCGCGCTGAGAGATGAGCAGAGGAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058141 True 780 lncRNA 0.54 3 14346867 14360848

Neighbor

gene id symbol gene type direction distance location
XLOC_028640 nell2b coding downstream 17870 14247693 ~ 14328997 (-)
XLOC_028639 twf1b coding downstream 139396 14193080 ~ 14207471 (-)
XLOC_028638 pus7l coding downstream 154613 14188327 ~ 14192254 (-)
XLOC_028635 NA coding downstream 160138 14174239 ~ 14186729 (-)
XLOC_028642 NA coding upstream 70115 14430963 ~ 14444890 (-)
XLOC_028643 plxnb2a coding upstream 88385 14449233 ~ 14624481 (-)
XLOC_028644 si:ch211-127b11.1 coding upstream 275461 14636309 ~ 14642379 (-)
XLOC_028645 si:dkey-183c2.4 coding upstream 283228 14644076 ~ 14649158 (-)
XLOC_028646 BX571719.3 coding upstream 352160 14713008 ~ 14743655 (-)
XLOC_028636 CR786571.1 non-coding downstream 167387 14176521 ~ 14179480 (-)
XLOC_028633 CR786571.2 non-coding downstream 176461 14167042 ~ 14170406 (-)
XLOC_028632 NA non-coding downstream 184540 14106675 ~ 14162327 (-)
XLOC_028631 NA non-coding downstream 367154 13969161 ~ 13979713 (-)
XLOC_028647 BX571719.1 non-coding upstream 383728 14744576 ~ 14744691 (-)
XLOC_028648 NA non-coding upstream 403502 14764350 ~ 14893241 (-)
XLOC_028653 NA non-coding upstream 614484 14975332 ~ 14980376 (-)
XLOC_028655 BX571796.1 non-coding upstream 645368 15006216 ~ 15006700 (-)
XLOC_028637 si:dkey-234l24.8 coding downstream 161642 14180997 ~ 14185225 (-)

Expression


Co-expression Network