XLOC_028644 (si:ch211-127b11.1)


Basic Information

Item Value
gene id XLOC_028644
gene name si:ch211-127b11.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14636309 ~ 14642379 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055556
CCGGCTTTTCTCAAGAAATACGCTTTTATTTTTTCCGCCAGCTTCGGCGATCTTGTTTTTGGGAGACGAATAATGTAATTATTCATCGCTTTCATCGCGATCGGACTCTTGATCCGCCGTCGCGAGTTGTTTCTCGGAAAGatgAAGTGGATATTGCTGGCAGCTTTTTCTCTGCTGCTGTGTTTTGGCTCATCTTGCTGTAATGATGCTCAAGAACAATTATTGTATCCTACCATCATCAATAATGTGGTCCAGGACCCTCAAACCTGCCGAATCTACCTTGGAGCTGTCAATGGGATCTTTCAGCTGAACCATAATCTACAGGTGGAGAGTTGTGCTGTAACAGACTCAAAAAAAGACCCAAAATGTGACCCCCCCAATCACTGTGAAGTGCACCGATGCGAAGGAAATGGACAACTTTAACAAACTCCTTCAGGTTAACTCCGTCTTGATCGTTTGTGGAATCCTTTTTAGGGGCATCTGCTCTTTGGTAAACCTCAACAGTGTGAATAAACCGGTGTACTACAGTGACACTGAAAGAGAGAAGACATGGGTTGCCAGCACTGAGGAATCTGTCACTGTGGTGGGGGTCATTTCTTATTTTAAGGACACTACTACTAATGCTAACCTCAGTGTATTTCTGGTGGGAAAAGGTTTTGGAAGTTCGGACAGCTCAAAGCTCATTAGCACTTGGTTGCTGCAGGAACATGGAGAAATGGATGTTTTTGAGAACATGGTTGAAGCTTCCACTGTTCAAGCGAGTGCGTTTGTCCATCGGTACCACCACGATTTTCGCTACACATTTAAGAATAATGGCTACATCTACTTGTTGTTCTCACACACTGCCAGCACAAGACACAGTAGGAAGATTACATTTATAGCACGCCTTAGCAAGAACGACCATCATTATTATTCTTACACCGAACTTCAGCTCAACTGCACCATTAACACTGAACAACAAGAGAACACATTCAACAAAGTCCAAGCAGCGTATCTGGCTAAACCTGGAAAGGTTTTGGCTCAGAATATCGTCCCATCAAATCTAAATGATAAGGTTCTGTTTGGAGTGTTCAGTGCAGATGAGGAGGACGGGCGATCAGCATTGTGCATGTACCCGCTTAGCAGCATTAATGCCAGGTTTGAGGAGGTGATTGAGTCCTGCTACACAGGAGAAGTTCTGGAGGATGACAAACCGAAGACTGTTTATTCACCCTACAACTCCAAGAATGAAGCCATATGCAGGACCAAAAGAGATAAGAACATGGTAAAGGCATATATATGTGGCGCAGAGTTCCTGCCATCTCCACTAGCCAGTAAACCTGAGTATGCTTTAGCCGTCAAACTCATATACACTGGGAATGACATGCTGACAGCTGTAGCTGTGGCGGTGGAGAACGAACACACTGTGGCATTCTTGGGAACCAGTGGAGCAGACGTCTTGAAGGTGCATCTTGACCCAAACCACACTGACTTTTACAACAGAATTCCAGGGCAACGCACAGGAGGTGCAGTGAACAAAAACCTCTTATTTGATACAGGTTTGGATCACCTCTACATCACCACTGGCAGAAAGatCTCCAAAGTGCCAGTGCAGGTCTGTGGTCCAAAAAATGATTGCCGCTCATGTTTAATCCAACAGGACCCATATTGTGGCTGGTGTGTGCGGGAGGGCCGTTGTACCAGGAAAAAGAATTGCAACAAAGGTGAAGGAGAGAATGTCTGGTTGTGGGGTCCAGATCAAGCATGTAAAATCCTTGAGCCCATAAATTTCCAAGCATGTATCGCAGTAGACCAGACTCCTCCAAATGGGATGAGCACACCTTTGTGGACCATAAATAGGTGAAACCTTGCAGTATTACTCAATCGCTATGTTTGAATATGCCAGTAGTTACTCAAAGCATTTTTTCTGCTGTACTTTAAATTTACTTTCTTATTGATATATAATTTAGCAGTATGTCCTTTAGCAATTTACATTGcgctttaaaatcttttttacatACTTTACATATTTAATAGATGAGACGTACACAATTTGCAGAACTGAGTCCATGGtattgagaaccactgatgttaTGAAGAGATCTAGAGAGGATGATATTACAATGGAAAGACAGGAGGGAGAAAGGGAATGTATTTTGCTTTTTGTGGCACTCGAGATGTAGTAAATGTAATAAAGACATGTAAATCAGAGGTTTTACCAGAAGAGAAGACTTCTGAGTTGATGCCATGGAGAGTGTCCATTTGTTGAGCAAATAAAAAACgatgaaaaaatta

Function

GO:

id name namespace
GO:1902287 semaphorin-plexin signaling pathway involved in axon guidance biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0030334 regulation of cell migration biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007162 negative regulation of cell adhesion biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0002116 semaphorin receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017154 semaphorin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-159 Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including generation of neurons; regulation of GTPase activity; and regulation of cell shape. Predicted to act upstream of or within semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Is expressed in liver. Orthologous to human PLXNB2 (plexin B2).

Ensembl:

ensembl_id ENSDARG00000077090

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055556 True 2274 mRNA 0.43 6 14636309 14642379

Neighbor

gene id symbol gene type direction distance location
XLOC_028643 plxnb2a coding downstream 11828 14449233 ~ 14624481 (-)
XLOC_028642 NA coding downstream 191419 14430963 ~ 14444890 (-)
XLOC_028641 NA coding downstream 275461 14346867 ~ 14360848 (-)
XLOC_028640 nell2b coding downstream 307312 14247693 ~ 14328997 (-)
XLOC_028639 twf1b coding downstream 428838 14193080 ~ 14207471 (-)
XLOC_028645 si:dkey-183c2.4 coding upstream 1697 14644076 ~ 14649158 (-)
XLOC_028646 BX571719.3 coding upstream 70629 14713008 ~ 14743655 (-)
XLOC_028647 BX571719.1 coding upstream 102197 14744576 ~ 14744691 (-)
XLOC_028648 NA coding upstream 121971 14764350 ~ 14893241 (-)
XLOC_028649 si:dkey-14k9.3 coding upstream 253127 14895506 ~ 14899113 (-)
XLOC_028635 NA non-coding downstream 449580 14174239 ~ 14186729 (-)
XLOC_028636 CR786571.1 non-coding downstream 456829 14176521 ~ 14179480 (-)
XLOC_028633 CR786571.2 non-coding downstream 465903 14167042 ~ 14170406 (-)
XLOC_028653 NA non-coding upstream 332953 14975332 ~ 14980376 (-)
XLOC_028655 BX571796.1 non-coding upstream 363837 15006216 ~ 15006700 (-)
XLOC_028657 AL590150.2 non-coding upstream 492860 15135239 ~ 15140224 (-)

Expression


Co-expression Network