XLOC_028645 (si:dkey-183c2.4)


Basic Information

Item Value
gene id XLOC_028645
gene name si:dkey-183c2.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14644076 ~ 14649158 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055557
GCACTTTGATCAGTCTGTACCTCAGTCAGATTGACATaaataaacagagagagaggaagagagacagAGCCTGTGCTGCAGTGGACTGTGTGAATTGGATGTGCTCTAAAAATTGAGATGAAGTGGACGTTGCTGGCAGCTTTCTCTCTGCTGCTGTGCTTTGGCTCATCTTGCTGTGATGATGCTCAAAAACAGTTCTCGTCTCCTACCATCATCAATAATGTGGTCCAGGACCCTCAAACAGGCCGAATCTACCTTGGAGCTGTCAATGGGATCTTTCAGCTGAACCACAATCTACAGGAGGAGAGCAGAGCAGACACAGGCCCTAAGAAAGACAACCCACAGTGCACTCCACCTATCACTGCGAAGTGCACCGATGCGAAGGAAATGGACAACTTTAACAAACTCCTTCTGGTTAACTCCGCCAACGGCACCTTGATTGTTTGTGGAAGCCTTTTCAGGGGCATCTGCTCTTTGGTAAACCTCAACAGTGTGAATAAACCGGTGTACTACAGTGACACCAAAGGAGAGAAGACATGGGTTGCCAGCACTGAAGAATCTGTCACTGTGGTGGGGGTCATTTCTTATTTTAAGGACACTACTACTAATGCTAACCTCAGTGTATTTCTAGTGGGAAAAGGTTATGGAAGTTCGGACAGCTCAAAGCTCATTAGCACTCGGTTGCTGCAGGAACATGGAGAAATGGATGTTTTTGAGAACATGGTTGAAGCTTCCACTGTTCAAACGAGCTCTTTTGTTCATCGGTACCTCCATGATTTTCGCTACACGTTTAAAGACAATGGCTACATCTACTTCCTGTTCTCCCGCTCTCCTGGCACTAGCGACAGCAGGAGGATTACGTTTATAGCACGCCTTTGCGAGAACGACCATCATTATTATTCTTACACCGAACTTCAGCTCAACTGCACCGTTAACACTGAACAACAAGAGAACACATTCAACAAAGTCCAAGCAGCGTATCTGGCTAAACCTGGAAAGGTTTTGGCTCAGAATATCGTCCCATCAAATCTAAATGATAAGGTTCTGTTTGGAGTGTTCAGTGCAGATGAGGCGGACGGGCGATCAGCATTGTGCATGTACCCGCTTAGCAGCATTAATGCCAGGTTTGAGGAGGTGATTGAGTCCTGCTACACAGGAGAAGTTCTGGAGGATGACAAACCGAAGACTGTTTATTCACCCTACAACTCCAAGAATGAAGCCATATGCAGGACCAAAAGAGATAAGAACATGGTAAAGGCATATATATGTGGCGCAGAGTTCCTGCCATCTCCACTAGCCAGTAAACCTGAGTATGCTTTAGCTGTCAAACCCATCTACACTGGGAATGACATGCTGACAGCTGTGGCAGTGGCGGTGGAGAACGAACACACTGTGGCATTCTTGGGAACCAGTGGAGCAGACGTCTTGAAGGTGCATCTTGACCCAAACCACACTGACTTTTACAACAGAATTCCAGAGGAGCACACAGAAGGTGCAGTGAACAAAAACCTCTTATTTGATACAGGTTTGGATCACCTCTACATCACCACTGGCAGAAAGatCTCCAAAGTGCCAGTGCAGGTCTGTGGTCAGAAAAATGATTGTCGCTCATGTTTGGTCCAACGTGACCCATATTGTGGCTGGTGTGTGCGGGAGGGCCGTTGTACCAGGAAAAAGAATTGCCACAAAGGTGAAGGAGAGAATGTCTGGTTGTGGGGTCCAGATCAAGCATGTAAAATCCTTGAGCCCATCAAAATCCAAGCATGTATCCCAGACCAGACTCCTTCAAATGGGACGACCACACCTCCTAGTGGTGGACTGTAAATAGGTGGAACCTTGCAGTATTACTCAATCGCTTTGTTTGAATATGCCAGTAGATGctcaaagcatttttttctgctgtacTTTAAATTTACTTTCTTATTGATATATAATTTAGCAGTATGTCCTTTAGCAATttacattgctttttaaaatctttttttacctACTTTACATATTTAATAGACGAGACGTACACAATTTGCAGAACTAAGTCCATGGtattgagaaccactgatgttaTGAAGAGATCTAGAGAGGATGATATTACAATGGAAAGACAGGAGGGAGAAAGGGAATGTATTTTGCTTTGTGGCACTTGAGATGTAGTAAATGTAATAAAGACATGTAAATCAGAGGTTTTACCAGAACAGAAGACTTCTAAATTGATGCCATGGAGAGTGTCCATTTGttgagcaaataaaaaaaagatggaaaAGTTA

Function

GO:

id name namespace
GO:1902287 semaphorin-plexin signaling pathway involved in axon guidance biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0030334 regulation of cell migration biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007162 negative regulation of cell adhesion biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0002116 semaphorin receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017154 semaphorin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-121 Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including generation of neurons; regulation of GTPase activity; and regulation of cell shape. Predicted to act upstream of or within semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human PLXNB2 (plexin B2).

Ensembl:

ensembl_id ENSDARG00000079892

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055557 True 2264 mRNA 0.44 6 14644076 14649158

Neighbor

gene id symbol gene type direction distance location
XLOC_028644 si:ch211-127b11.1 coding downstream 1697 14636309 ~ 14642379 (-)
XLOC_028643 plxnb2a coding downstream 19595 14449233 ~ 14624481 (-)
XLOC_028642 NA coding downstream 199186 14430963 ~ 14444890 (-)
XLOC_028641 NA coding downstream 283228 14346867 ~ 14360848 (-)
XLOC_028640 nell2b coding downstream 315079 14247693 ~ 14328997 (-)
XLOC_028646 BX571719.3 coding upstream 63850 14713008 ~ 14743655 (-)
XLOC_028647 BX571719.1 coding upstream 95418 14744576 ~ 14744691 (-)
XLOC_028648 NA coding upstream 115192 14764350 ~ 14893241 (-)
XLOC_028649 si:dkey-14k9.3 coding upstream 246348 14895506 ~ 14899113 (-)
XLOC_028650 akr1b1.2 coding upstream 257450 14906608 ~ 14915268 (-)
XLOC_028635 NA non-coding downstream 457347 14174239 ~ 14186729 (-)
XLOC_028636 CR786571.1 non-coding downstream 464596 14176521 ~ 14179480 (-)
XLOC_028633 CR786571.2 non-coding downstream 473670 14167042 ~ 14170406 (-)
XLOC_028653 NA non-coding upstream 326174 14975332 ~ 14980376 (-)
XLOC_028655 BX571796.1 non-coding upstream 357058 15006216 ~ 15006700 (-)
XLOC_028657 AL590150.2 non-coding upstream 486081 15135239 ~ 15140224 (-)

Expression


Co-expression Network