XLOC_028648


Basic Information

Item Value
gene id XLOC_028648
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14764350 ~ 14893241 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058143
TTGTTCCCGTGTTTTTCAGCAATGCCAGCACCTCTCAATAACAGATACAAGCAGAAGGAATCTGAGAAAGGATTTCAGACCTGGTTTTCCAGGGATTTGCTGCTTAAGAAGGGAGTACGGATGTGAGACAGCAGGAGTGaagAGTGGAACTTCCAGCTCGGGAAGCAATTAGAGCAAGGGGAGGCCCAGCAGAGGAGCCTGCGCTGGGGAGACGGAGGCGGCAGGTGCTGCTGTCGCTCCTCTGGAGGAATAATCAACTGCTCAAAGGGGTGTGAATGGATTGATCATGTCAAGGTCATGTGAGCGACAGATGCAACAGATGGCAGAGCGAGTGCCAGATTAACCATGAGAGACTGATGTGGGCAACATCTGCAGCTGCTTGAAGATCCTTTCATTCTCATCTGAAGCTTTTCAGTGCCATGGGAGCAGTTTCTATGTGGGAGCCAAGAATCTGCACACTTTAAAAGAGCCAGTTTTCCTGATGTTACAGCATGTTGAATGGGTCTTTTGGATGGAGTCCGGAGCTCTTGTACAGCAGGATCTGGATCCAGTCCAGCAGTTGAAGGCAGAAGATCGTCTGAGGATGTATAAAAAAAACCTCCTGCATTTCCCTTTAAATGACCGACTGAAGAAATTTAAAGCGTGACTTCTGGTTTCACACAAAATCCTTTCAAGTGACTTCTGAATGGATTCATTTCCAATTGAACTTCGT
>TCONS_00058144
TTGTTCCCGTGTTTTTCAGCAATGCCAGCACCTCTCAATAACAGATACAAGCAGAAGGAATCTGAGAAAGGATTTCAGACCTGGTTTTCCAGGGATTTGCTGCTTAAGAAGGGAGTACGGATGTGAGACAGCAGGAGTGaagAGTGGAACTTCCAGCTCGGGAAGCAATTAGAGCAAGGGGAGGCCCAGCAGAGGAGCCTGCGCTGGGGAGACGGAGGCGGCAGGTGCTGCTGTCGCTCCTCTGGAGGAATAATCAACTGCTCAAAGGGGTGTGAATGGATTGATCATGTCAAGGTCATGTGAGCGACAGATGCAACAGATGGCAGAGCGAGTGCCAGATTAACCATGAGAGACTGATGTGGGCAACATCTGCAGCTGCTTGAAGATCCTTTCATTCTCATCTGAAGCTTTTCAGTGCCATGGGAGCAGTTTCTATGTGGGAGCCAAGAATCTGCACACTTTAAAAGAGCCAGTTTTCCTGATGTTACAGCATGTTGAATGGGTCTTTTGGATGGAGTCCGGAGCTCTTGTACAGaaaaatgTTGACGGTATTACATGTGCGGAAAAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058143 False 712 lncRNA 0.47 7 14764350 14893241
TCONS_00058144 True 569 lncRNA 0.49 6 14819500 14893241

Neighbor

gene id symbol gene type direction distance location
XLOC_028647 BX571719.1 coding downstream 19659 14744576 ~ 14744691 (-)
XLOC_028646 BX571719.3 coding downstream 20695 14713008 ~ 14743655 (-)
XLOC_028645 si:dkey-183c2.4 coding downstream 115192 14644076 ~ 14649158 (-)
XLOC_028644 si:ch211-127b11.1 coding downstream 121971 14636309 ~ 14642379 (-)
XLOC_028643 plxnb2a coding downstream 139869 14449233 ~ 14624481 (-)
XLOC_028649 si:dkey-14k9.3 coding upstream 2265 14895506 ~ 14899113 (-)
XLOC_028650 akr1b1.2 coding upstream 13367 14906608 ~ 14915268 (-)
XLOC_028651 prdm4 coding upstream 24261 14917502 ~ 14926637 (-)
XLOC_028652 slc26a5 coding upstream 39296 14932537 ~ 14954327 (-)
XLOC_028653 NA coding upstream 82091 14975332 ~ 14980376 (-)
XLOC_028642 NA non-coding downstream 319460 14430963 ~ 14444890 (-)
XLOC_028641 NA non-coding downstream 403502 14346867 ~ 14360848 (-)
XLOC_028635 NA non-coding downstream 577621 14174239 ~ 14186729 (-)
XLOC_028636 CR786571.1 non-coding downstream 584870 14176521 ~ 14179480 (-)
XLOC_028655 BX571796.1 non-coding upstream 112975 15006216 ~ 15006700 (-)
XLOC_028657 AL590150.2 non-coding upstream 241998 15135239 ~ 15140224 (-)
XLOC_028658 NA non-coding upstream 307868 15201109 ~ 15206403 (-)
XLOC_028660 NA non-coding upstream 551111 15444352 ~ 15454665 (-)

Expression


Co-expression Network