XLOC_028649 (si:dkey-14k9.3)


Basic Information

Item Value
gene id XLOC_028649
gene name si:dkey-14k9.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14895506 ~ 14899113 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055560
ATGGACAATAAAATCTCCCAACAAGAGCACTTTGAAGGTCCTTCCAAGCTCCTCTCCTGCTCGCATTGCCCGTTCACTAACTCTAAAGAGGAAAACCTTAGGGAGCATGTAAAGAAAGTCCATTCCACTGAGGTTACGGAAACCGAGACCGCCGCTGATCCCAGTTTGTCCTGTAAATGTGATGTCTGTGGCCGAAGCTACCGATTCTCTTTCTTATTGAAAGCTCACCAGCGGATTCACTCCAAAAAGCATCCCGTATCTAAACGCAGCAAGAGTTTCTCCCGTTCCCAAGCCGCGCATCAGCATGGACCTGCTCCTGAAACATCATCGCAAGATGATGCTGAGGAAAACACTCGACAAAAGAGCTACAGCTGTCTCTACTGCAGAGAAACCTTCAGCTCACTCAGCGCCAGGAGAAACCATCACAGAACCCATCCCGAAGAAACCTTGAATCAATGCACCGCCTGCGGGAAGAAGCTCAGCAGTCAAGCGGCTCTTAAAAGACACAAGCAAATCCACGAAGAGAAGCAATCCTATAATTGCTCCAAATGCAAGTCCACCTTCATCTGCTCGACCTCTTACAAACAGCACATGTTGACGCACGAGTCCGAAAGACCCTTCGTTTGTACCTGTGGAAAGGGTTTTAAATATCGCGGTGCTCTTTCGGCCCATAAACGCACTCATACTGAAGATAGACCATACCGTTGTTTAGACTGCGGAAAGGGGTTTTTATATCCCGGAGCTTTGACGACGCACCAGAAAAAACACTCTAAAGGTAACCCAGAGCATTGCACACAGTGTCACTCCAGTACGGAAAAGTGTGTTTGCTCCCAATCGCAAGCGGAGAAGTCTTTCAAATGCCCCACATGCGATAAGTTGTTCGCGTTCAAGTCCAGCTTAATCCggcacaaactcacacacaccgGAGAAAGACCGTTCCTTTGCTCAGACTGCGGGAAGGGCTTTTTAACTTTTGGTGAGCTGCTGAAGCACCAGCGCTACCACACGGGGCACAAACCGTTCCAGTGCACCGACTGTGAAAAGAGCTTTACGCAGGCCTGCTACCTGCAGGTCCACATGAGGCAGCACACCGGCGTACGGCCCTATTCCTGTTCCCAATGCGACAAGAGTTTCTACAGTTCGTCCCATCTCAAGAGGCACCTGCGGATTCATTCGGGGGAAAAGCCCTTCGAGTGCTTGGATTGCGGGAAGAGATTTCCGCAGCCGTATCATCTGAAAGTGCACTTCCAGACTCACATGCAAAAGAAACCCGAAAGCAAGAAATCCaatgaatag

Function

symbol description
si:dkey-14k9.3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in liver. Orthologous to human ZNF672 (zinc finger protein 672).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2893 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in liver. Orthologous to human ZNF672 (zinc finger protein 672).

Ensembl:

ensembl_id ENSDARG00000045595

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055560 True 1296 mRNA 0.50 2 14895506 14899113

Neighbor

gene id symbol gene type direction distance location
XLOC_028648 NA coding downstream 2265 14764350 ~ 14893241 (-)
XLOC_028647 BX571719.1 coding downstream 150815 14744576 ~ 14744691 (-)
XLOC_028646 BX571719.3 coding downstream 151851 14713008 ~ 14743655 (-)
XLOC_028645 si:dkey-183c2.4 coding downstream 246348 14644076 ~ 14649158 (-)
XLOC_028644 si:ch211-127b11.1 coding downstream 253127 14636309 ~ 14642379 (-)
XLOC_028650 akr1b1.2 coding upstream 7495 14906608 ~ 14915268 (-)
XLOC_028651 prdm4 coding upstream 18389 14917502 ~ 14926637 (-)
XLOC_028652 slc26a5 coding upstream 33424 14932537 ~ 14954327 (-)
XLOC_028653 NA coding upstream 76219 14975332 ~ 14980376 (-)
XLOC_028654 klhdc10 coding upstream 92676 14991789 ~ 15003893 (-)
XLOC_028642 NA non-coding downstream 450616 14430963 ~ 14444890 (-)
XLOC_028641 NA non-coding downstream 534658 14346867 ~ 14360848 (-)
XLOC_028635 NA non-coding downstream 708777 14174239 ~ 14186729 (-)
XLOC_028655 BX571796.1 non-coding upstream 107103 15006216 ~ 15006700 (-)
XLOC_028657 AL590150.2 non-coding upstream 236126 15135239 ~ 15140224 (-)
XLOC_028658 NA non-coding upstream 301996 15201109 ~ 15206403 (-)
XLOC_028660 NA non-coding upstream 545239 15444352 ~ 15454665 (-)

Expression


Co-expression Network