G953236 (LOC106578440)


Basic Information

Item Value
gene id G953236
gene name LOC106578440
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19768227 ~ 19769329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1086909
ggcTCTAAACCTCCCTTCCCAAAAGACTGTCTCCGTTCCCCTAACCCTAGACCAGGCTCCAGGCTGCCAGCCCTGTGCTCCCTCTCCCCGAAAAAAAGCTCTGGTCCAGGGGAGACTCCGCAGCTGGCTGGCCACTCTGGCTCCTGGAGGCTGGATGTGGAGCTGGTGGAGGTGAGGCTGAGTTTCTTGGCCACGCGGGGACTGGAGGAGCCCCCTGATCGGAACGGGACAGTCACGTCTGGAGGGGCCTGGGTGGGAGActttggggaggagagggagatggatacCACCCCCTCACCTTGGTTCCCCTTGTGGTTCATGTTTTGGGCCTGGCTGTAGTTAAAGTTAGTGGTTTGGTTATGGTTGTAGTTACTGTTTGTGGTGTGGTTTTGGCTATTGTTGTGAGAAGAGTTACGTAGAGGTTCAGAGCGCCGCGAGGTCGGGGGGAGGGTAGAGAGCACCAAGGCTCCATTATCATGGGAACGTGGCGACGATGACAGGCAGAGGCGGGGCAGAGAGAGGCTGTGACTTCCTATCATGCCGCCTATCGACCCTGCAGAGTACTTCCTGGTTCGGTTGCTAGGTGTCGGCTCATGGTTGCCGTGACTTCGGCGTCCCAGGCGGGGGCTGGAGGGCACGCTGGCTGCTCCACTggttggagagagggatgagcgtggaggaggagaggagaggctctCACCACCGGCCACTGAGTTAGAGGAACCTCCACCGTTCCACATCGACAACAGGGGGGAGGAGTTTGGGTTTAGTTGTCGTCGCCCGTCGCCAGGGGAGGCCAGCAGGCTGTCTTGTGATTGGTAGGATTGGTTCCGGGTCATGGAGGATCGGGAGGAAGGGGGGTCAGAGCGccgagagggggagggagggaccgCGGCTTTGACGGAGAGGGGCGGGCGATCAGAGCCATAGAAACGCCTAGCCTGCTCTTGATAGGCTGACGACATCGAGGTGGGTGAGGTCACAGGCGTGGTGGg

Function

NR:

description
pleckstrin homology-like domain family B member 2 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1086909 True 995 lncRNA 0.61 2 19768227 19769329

Neighbor

gene id symbol gene type direction distance location
abcc13 LOC106578442 coding downstream 66464 19684636 ~ 19701763 (-)
zmp:0000000991 LOC106578445 coding downstream 107718 19643041 ~ 19660509 (-)
LOC110535446 LOC106578446 coding downstream 139000 19627035 ~ 19629227 (-)
LOC110535445 ndub4 coding downstream 154436 19611791 ~ 19613791 (-)
arxa LOC106578448 coding downstream 181888 19565431 ~ 19586339 (-)
LOC110535450 tcpe coding upstream 24797 19794126 ~ 19799188 (-)
sema5a LOC106578437 coding upstream 121248 19890577 ~ 20084385 (-)
si:dkey-118j18.2 LOC106578436 coding upstream 337950 20107279 ~ 20118785 (-)
timm21 timm21 coding upstream 361189 20130518 ~ 20133776 (-)
neto1l neto1 coding upstream 365919 20135248 ~ 20319367 (-)
G953170 NA non-coding downstream 95458 19672535 ~ 19672769 (-)
G952465 NA non-coding downstream 104184 19663775 ~ 19664043 (-)
G952393 NA non-coding downstream 206872 19560175 ~ 19561355 (-)
G952407 NA non-coding downstream 213371 19554352 ~ 19554856 (-)
G952366 NA non-coding downstream 272005 19495370 ~ 19496222 (-)
G953243 NA non-coding upstream 16325 19785654 ~ 19787002 (-)
G953255 NA non-coding upstream 47828 19817157 ~ 19818290 (-)
G953254 NA non-coding upstream 50826 19820155 ~ 19849554 (-)
G953283 NA non-coding upstream 89490 19858819 ~ 19859168 (-)
G953284 NA non-coding upstream 90173 19859502 ~ 19859737 (-)
G952255 LOC106578453 other downstream 353491 19401554 ~ 19414736 (-)
dap dap other downstream 904452 18849188 ~ 18863855 (-)
G951713 NA other downstream 996644 18769814 ~ 18771583 (-)
G951233 NA other downstream 1171039 18592818 ~ 18597188 (-)
G951234 NA other downstream 1180484 18585893 ~ 18587743 (-)
G954441 NA other upstream 1308321 21077650 ~ 21078658 (-)
G954484 arhgef4 other upstream 1476685 21246014 ~ 21253309 (-)
G954919 NA other upstream 1810254 21579583 ~ 21579828 (-)
G956234 LOC106578494 other upstream 2983951 22753280 ~ 22756973 (-)
G956366 NA other upstream 3237821 23007150 ~ 23043985 (-)

Expression


Co-expression Network