G953254


Basic Information

Item Value
gene id G953254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19820155 ~ 19849554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1086929
agaaagagagagaggccacaaGCTCATGTGCTCCAGAATTGCTCTGTAAAAAAAATGGTTTAGAGTTGGTTAAGCTTGGATTTTTTCACAAGGATTTATAAaagatactaccctctacaacataaccttcactccaaatcaaacCTAAAACATGGATTTTTACCAAGGATTTTTACTTCCAAGGACAATCCAGTGAACCAAAACCCAGCAGGAGAAgcacaacagaaacctgaaaatacCATCCAACCTGAAACGGAagtcgtagctgaacaacgacattaagaacatacagctggcaggttaCACACTCtattggcaggacagaacagcagcctctgGCCTCGCCTCGCTCACCTCTCCACACAAGGAGCAAAATCAATAGGAAAAACATGGCTTCCAATTCTATCACATCTCTGCCCAGAACACAGGCCCCGAGGGAAGCAGCATCTCAATATTACAGCCAGATACTCCATTTTGGGTCCAAATAAGGCAGTTGCCTCTCAGATGAACAGGAAGCAGGGGAAACTGTGATTCAGCAGGAGCAAGGTCTCCTCTGCCTTTTTTCATGTTCAATGGGGTTTGATGCTCTGCGTAAGATGGTGTTGAGAGATTGTGATAAAATGTACCTGTACGCGATGATTCCAGGAAGTGCCACTAAGCTATGATTACTGATGTTTTACATGCCCTATTTTGAATGCATTCAGCTGAATATGGCAAACCTATGGAGAGCAGTTTACAATAACAAAAACTCTACCTGTCATCTGATGAACAACCTCAATGAATAATGTCAATCATACCACTTGTTGCACTGATGAATGAAAACAGCATGCTACCCTGACTGTTTAAGATTTGTAACAACCCAGCCTGATCCTCAGGTAAGGTCATCCTGCTCCATTACTCATCCTTAAGCTCAGACATGGCTAATCAATATCAGACAGCCGGAGGTCTCCAGATCCCACTGAGACAGTTATGACCCTTcaaccgctccctctctcttttgcttCCGTGGTTACAAAGTGGCACAAAGTACTTTTCAAAACATCCATTGAttgacagaggcagacagaatgagggaagggggaggggagagggagcgacAGAGAAAAGAGGAAGAATTGAAGTGTCCCCATGCTGTTTTTGTTGCTTAAAGGAGGCACCTTCAGGTTTTGTTGGTGATAAAACATCCTGCTGTCAAAATGAACGTTGTTATCTCTTATCAAAGCACAGCATCTGGGGTAAACGCCTTGTTTGGAATTTTAATTTGGGTACTGTACAAAGCTTTCCTCGTGACAGGTTTTACAATCTGCCAGAACCATGGCAGGGGACATAGAGgtgaaggaggagaaagagtgaaggagagagagcagagaaagacaagcagactactagagaaagagagcaagacaggcagagaggggtggggggcatgaagagacgagggagagaaaatatgagagaagagagacaggtacaCTGAAAGATCGGTTTGCCCCAGCGTCTTCCTCGCCTTCCAGCAGTGAAAAGCTTTATATAGAGAAAAGGACCGTCTATGGAGGAGCACAAAGGAGAGAAAAGCACTGTCAGACTGCACTTAAGAGGCGAGAAGCCGCCCTTCTACAGCAAATCATCAGGGCTTACATCACTACCATGTATGTTACTGATTGGTGTTATTGTAGACATTAAACATTTTCAGAATGCTATAGAGTGGAATATCCCAGTTATATCAATCAGATTTGAAAGAAGGTACATCATGTAACTTGATAGCTATGTAATCTGAAAAACCTTTCACATGTAAGAGGACGCTTAATGTAAGATTCCTTGGGCATATGAGCAGATCCCACTgatggcttgcctctgaagctaagcagggttggtcctggtcggtccatGGATGAGAGACAAAATGCTGCTGGAAATGGTGTTGGAGAGCCAGTagaaggcactctttcctctggtctaaaaaagatcccaatgccccagggcagtgattggggacattgccctgtgtagggtgccgtctttcagacGTAAAGTTAAACGGAAATGGATGTCCTGACTctttgtggtcactaaagatcccatggcacatcataagagtaggggtgttaaccctggtgtcctggctaaattccctaTCTGTTCCTCATACCATCATAGCCACCTAATCATTCCaaattggctcattcctcctccctcctttcccctgtaactattaaccaggtcgttgctgtaaatgatgTGTTATCACTCAACTTACCTGGTACAATAAGGGTTCAATAAATAAACAATGACATTCCACA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1086929 True 2300 lncRNA 0.44 3 19820155 19849554

Neighbor

gene id symbol gene type direction distance location
LOC110535450 tcpe coding downstream 20967 19794126 ~ 19799188 (-)
abcc13 LOC106578442 coding downstream 118392 19684636 ~ 19701763 (-)
zmp:0000000991 LOC106578445 coding downstream 159646 19643041 ~ 19660509 (-)
LOC110535446 LOC106578446 coding downstream 190928 19627035 ~ 19629227 (-)
LOC110535445 ndub4 coding downstream 206364 19611791 ~ 19613791 (-)
sema5a LOC106578437 coding upstream 41023 19890577 ~ 20084385 (-)
si:dkey-118j18.2 LOC106578436 coding upstream 257725 20107279 ~ 20118785 (-)
timm21 timm21 coding upstream 280964 20130518 ~ 20133776 (-)
neto1l neto1 coding upstream 285694 20135248 ~ 20319367 (-)
fbxo15 fbxo15 coding upstream 605226 20454780 ~ 20487396 (-)
G953255 NA non-coding downstream 1865 19817157 ~ 19818290 (-)
G953243 NA non-coding downstream 33153 19785654 ~ 19787002 (-)
G953236 LOC106578440 non-coding downstream 50826 19768227 ~ 19769329 (-)
G953170 NA non-coding downstream 147386 19672535 ~ 19672769 (-)
G952465 NA non-coding downstream 156112 19663775 ~ 19664043 (-)
G953283 NA non-coding upstream 9265 19858819 ~ 19859168 (-)
G953284 NA non-coding upstream 9948 19859502 ~ 19859737 (-)
G953286 NA non-coding upstream 11867 19861421 ~ 19861669 (-)
G953378 NA non-coding upstream 150446 20000000 ~ 20001619 (-)
G953513 NA non-coding upstream 413897 20263451 ~ 20263916 (-)
G952255 LOC106578453 other downstream 405419 19401554 ~ 19414736 (-)
dap dap other downstream 956380 18849188 ~ 18863855 (-)
G951713 NA other downstream 1048572 18769814 ~ 18771583 (-)
G951233 NA other downstream 1222967 18592818 ~ 18597188 (-)
G951234 NA other downstream 1232412 18585893 ~ 18587743 (-)
G954441 NA other upstream 1228096 21077650 ~ 21078658 (-)
G954484 arhgef4 other upstream 1396460 21246014 ~ 21253309 (-)
G954919 NA other upstream 1730029 21579583 ~ 21579828 (-)
G956234 LOC106578494 other upstream 2903726 22753280 ~ 22756973 (-)
G956366 NA other upstream 3157596 23007150 ~ 23043985 (-)

Expression


Co-expression Network