G952563


Basic Information

Item Value
gene id G952563
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19858827 ~ 19859054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1086157
gttgagaacaagttctcatttgcaactgcgacctggccaagataaagcatagcagtgtgaacagacaatacagagttacacatggagtaaacaattaacaagtcaataacacagtagaaaaaaaagagagtctatatacattgtgtgcaaaaggcatgaggaggtaggcgaataattacaattttgtagattaacactggagtgataaatgatcagatggtcatggac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1086157 True 228 lncRNA 0.37 1 19858827 19859054

Neighbor

gene id symbol gene type direction distance location
mtrr LOC106578438 coding upstream 24373 19801737 ~ 19834454 (+)
phldb2b tcpe coding upstream 72587 19740565 ~ 19799150 (+)
plcxd2 LOC106578441 coding upstream 124528 19725269 ~ 19734299 (+)
chodl LOC106578443 coding upstream 174187 19672943 ~ 19684640 (+)
trnac-gca-2 NA coding upstream 229416 19629340 ~ 19629411 (+)
LOC110536583 LOC106578430 coding downstream 342146 20201200 ~ 20203760 (+)
cbln2b cbln2 coding downstream 636418 20495472 ~ 20499005 (+)
rttn rttn coding downstream 901517 20760571 ~ 20820549 (+)
cd226 cd226 coding downstream 962109 20821163 ~ 20833382 (+)
trpc1 trpc1 coding downstream 1210711 21069765 ~ 21117062 (+)
G952541 NA non-coding upstream 26590 19831926 ~ 19832237 (+)
G952509 NA non-coding upstream 128453 19728483 ~ 19730374 (+)
G952229 NA non-coding upstream 217356 19640641 ~ 19641471 (+)
G952564 NA non-coding downstream 2356 19861410 ~ 19861642 (+)
G952565 NA non-coding downstream 3412 19862466 ~ 19862699 (+)
G952566 NA non-coding downstream 3673 19862727 ~ 19862999 (+)
G952613 NA non-coding downstream 71396 19930450 ~ 19932886 (+)
G952770 NA non-coding downstream 313911 20172965 ~ 20174678 (+)
G951511 NA other upstream 731742 19126665 ~ 19127085 (+)
G948710 NA other upstream 3256935 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 3313538 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 3523535 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 2867499 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 3806234 23665288 ~ 23665930 (+)
G956797 NA other downstream 3916718 23775772 ~ 23776845 (+)
G957942 NA other downstream 4741417 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 4935546 24794600 ~ 24795736 (+)

Expression


Co-expression Network