G952770


Basic Information

Item Value
gene id G952770
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 20172965 ~ 20174678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1086396
gtttaaatgtatgctgtttaaatgcatgctgtttaaatgtatgctgtttaaaatgtatgctgtttaaatgtatgctgtttaCAATGTATGCTGTTTTAAATGCATGCTGttttaaatgtatgctgtttacaatgtatgctgtttaaatgcatgctgttttaaatgtatgctgtttacaatgtatgctgtttaaatgtatgctgtttaaatgtatgctgtttaaatgtatgctgttttaaatgtatgctgtttaaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1086396 True 257 lncRNA 0.28 2 20172965 20174678

Neighbor

gene id symbol gene type direction distance location
mtrr LOC106578438 coding upstream 338511 19801737 ~ 19834454 (+)
phldb2b tcpe coding upstream 386725 19740565 ~ 19799150 (+)
plcxd2 LOC106578441 coding upstream 438666 19725269 ~ 19734299 (+)
chodl LOC106578443 coding upstream 488325 19672943 ~ 19684640 (+)
trnac-gca-2 NA coding upstream 543554 19629340 ~ 19629411 (+)
LOC110536583 LOC106578430 coding downstream 26522 20201200 ~ 20203760 (+)
cbln2b cbln2 coding downstream 320794 20495472 ~ 20499005 (+)
rttn rttn coding downstream 585893 20760571 ~ 20820549 (+)
cd226 cd226 coding downstream 646485 20821163 ~ 20833382 (+)
trpc1 trpc1 coding downstream 895087 21069765 ~ 21117062 (+)
G952613 NA non-coding upstream 240079 19930450 ~ 19932886 (+)
G952566 NA non-coding upstream 309966 19862727 ~ 19862999 (+)
G952565 NA non-coding upstream 310266 19862466 ~ 19862699 (+)
G952564 NA non-coding upstream 311323 19861410 ~ 19861642 (+)
G952563 NA non-coding upstream 313911 19858827 ~ 19859054 (+)
G952936 NA non-coding downstream 223422 20398100 ~ 20398333 (+)
G952942 NA non-coding downstream 232739 20407417 ~ 20407649 (+)
G953037 NA non-coding downstream 383297 20557975 ~ 20558277 (+)
G953040 NA non-coding downstream 385409 20560087 ~ 20560288 (+)
G953042 NA non-coding downstream 387328 20562006 ~ 20562288 (+)
G951511 NA other upstream 1045880 19126665 ~ 19127085 (+)
G948710 NA other upstream 3571073 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 3627676 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 3837673 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 2551875 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 3490610 23665288 ~ 23665930 (+)
G956797 NA other downstream 3601094 23775772 ~ 23776845 (+)
G957942 NA other downstream 4425793 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 4619922 24794600 ~ 24795736 (+)

Expression


Co-expression Network