G953859


Basic Information

Item Value
gene id G953859
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 20805942 ~ 20806655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1087607
ggggtgaagtgactatggatagataataaacagagagtagcagcagtgtacatgtaggtaggggtgaagtgactatggatagataataaacagagagtagcagcagtgtacatgtaggtaggggtgaagtgactatggatagataataaacagagagtagcagcagtgtacatgtaggtaggggtgaagtgactatggatagataataaacagagagtagcagcagtgtacatgtaggtaggggtgaagtgactatgaatagataataaacagtgactagcagcagtgtacatgtaggtaggggtgaagtgactatggatagataataaacagtgactagcagcagtgtacatgtagg

Function

NR:

description
PREDICTED: tight junction protein ZO-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1087607 True 358 lncRNA 0.42 2 20805942 20806655

Neighbor

gene id symbol gene type direction distance location
cbln2b cbln2 coding upstream 306937 20495472 ~ 20499005 (+)
LOC110536583 LOC106578430 coding upstream 602182 20201200 ~ 20203760 (+)
mtrr LOC106578438 coding upstream 971488 19801737 ~ 19834454 (+)
phldb2b tcpe coding upstream 1019702 19740565 ~ 19799150 (+)
plcxd2 LOC106578441 coding upstream 1071643 19725269 ~ 19734299 (+)
cd226 cd226 coding downstream 14508 20821163 ~ 20833382 (+)
trpc1 trpc1 coding downstream 263110 21069765 ~ 21117062 (+)
LOC110535465 LOC106578468 coding downstream 324828 21131483 ~ 21149309 (+)
LOC110535467 arhg4 coding downstream 441168 21247823 ~ 21325738 (+)
fbxo45 LOC106578473 coding downstream 538821 21345476 ~ 21347872 (+)
G953804 NA non-coding upstream 56240 20749492 ~ 20749702 (+)
G953056 NA non-coding upstream 62779 20742832 ~ 20743163 (+)
G953162 NA non-coding upstream 64690 20737630 ~ 20741252 (+)
G953158 NA non-coding upstream 75337 20730283 ~ 20730605 (+)
G953155 NA non-coding upstream 78485 20727197 ~ 20727457 (+)
G953893 NA non-coding downstream 83613 20890268 ~ 20893638 (+)
G953942 NA non-coding downstream 162227 20968882 ~ 20969243 (+)
G953970 NA non-coding downstream 210364 21017019 ~ 21017270 (+)
G953971 NA non-coding downstream 212577 21019232 ~ 21019600 (+)
G953973 NA non-coding downstream 215208 21021863 ~ 21022096 (+)
G951511 NA other upstream 1678857 19126665 ~ 19127085 (+)
G948710 NA other upstream 4204050 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 4260653 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 4470650 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 1919898 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 2858633 23665288 ~ 23665930 (+)
G956797 NA other downstream 2969117 23775772 ~ 23776845 (+)
G957942 NA other downstream 3793816 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 3987945 24794600 ~ 24795736 (+)

Expression


Co-expression Network