XLOC_028657 (AL590150.2)


Basic Information

Item Value
gene id XLOC_028657
gene name AL590150.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15135239 ~ 15140224 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055571
ctatttatccgcattacaaatacagtaacgttagttatcgctgaactttagtggcgcttgttgtgacgaaaatatgcgtgttttttttttaagatttacttttatgagatcacctgcaggaagcaggtgaggagatcagctgtgattcggtccggcgtcagcgagcggctcatgaccagaccagtcgttgttttctccatgatcgccggggcagcagcagttttaacccgccgaggcttttagaacattataaagcagtttcagctcaaaatggacccgtgagtgtcactaccagtttgtgagctgatatgcagtggaaattgacatccagaaggaagtcatagaggaaacaccagctgatgcaagtgctgcagaagaattcaatcgaatatcaggaagaaatgtgagatccaagttctacgctgcattggacacacactgctcgtttgattgaaataaaaaaaaaaaaaaacaggagaaaattgcagaagaaaactagaagaaattttcaacatgttaattcaaaggtcatctggcagcagttttccggggtctttcagtcctttagagggatgagtctaaagaaattttcaggatgtgttttgatgtaattgtagagtcggacttcagtgcagaagatgttggcctgctgactgtcgtgtgtgaagatgtctaaagaacctcattatggatgcaatgtgggcctttatactggaaggaaaagtggttatggactttgccacatgcagtatgtctctttttttgctttgatttacacactgaattcggactacccaaagactttgagcaatgcatttgaatttgttcaatgtgtgttgcttttgctgggagggaagcgtaatgtgttttattcggcgagtgcctatatactgctgtgctttatgtttaaaggttcaggtataatggcatgtttaattacaaagtgttgctttttaacatgttgctgtttgcagtgttacatttaggactgcagcattttggtgtttaaaacactttttttttttttaccaaaaaagtgtattgtgatttatagggttgtcaaaagtattgagtttggtacc
>TCONS_00055572
gacaggatttcatattgagaagatgtactgctgtaaatcaagactaccagtttgtgagctgatatgcagtggaaattgacatccagaaggaagtcatagaggaaacaccagctgatgcaagtgctgcagaagaattcaatcgaatatcaggaagaaatgtcatctggcagcagttttccggggtctttcagtcctttagagggatgagtctaaagaaattttcaggatgtgttttgatgtaattgtagagtcggacttcagtgcagaagatgttggcctgctgactgtcgtgtgtgaagatgtctaaagaacctcattatggatgcaatgtgggcctttatactggaaggaaaagtggttatggactttgccacatgcagtatgtctctttttttgctttgatttacacactgaattcggactacccaaagactttgagcaatgcatttgaatttgttcaatgtgtgttgcttttgctgggagggaagcgtaatgtgttttattcggcgagtgcctatatactgctgtgctttatgtttaaaggttcaggtataatggcatgtttaattacaaagtgttgctttttaacatgttgctgtttgcagtgttacatttaggactgcagcattttggtgtttaaaacactttttttttttttaccaaaaaa
>TCONS_00055573
atgtactgctgtaaatcaagactaccagtttgtgagctgatatgcagtggaaattgacatccagaaggaagtcatagaggaaacaccagctgatgcaagtgctgcagaagaattcaatcgaatatcaggaagaaatgtgagatccaagttctacgctgcattggacacacactgctcgtttgattgaaataaaaaaaaaaaaaaacaggagaaaattgcagaagaaaactagaagaaattttcaacatgttaattcaaaggtcatctggcagcagttttccggggtctttcagtcctttagagggatgagtctaaagaaattttcaggatgtgttttgatgtaattgtagagtcggacttcagtgcagaagatgttggcctgctgactgtcgtgtgtgaagatgtctaaagaacctcattatggatgcaatgtgggcctttatactggaaggaaaagtggttatggactttgccacatgcagtatgtctctttttttg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092341

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055571 False 1082 lncRNA 0.40 6 15135239 15139790
TCONS_00055572 False 667 lncRNA 0.39 6 15135285 15140224
TCONS_00055573 True 498 lncRNA 0.40 6 15135556 15140202

Neighbor

gene id symbol gene type direction distance location
XLOC_028656 nrf1 coding downstream 31543 15081385 ~ 15103696 (-)
XLOC_028655 BX571796.1 coding downstream 128539 15006216 ~ 15006700 (-)
XLOC_028654 klhdc10 coding downstream 131346 14991789 ~ 15003893 (-)
XLOC_028653 NA coding downstream 154863 14975332 ~ 14980376 (-)
XLOC_028652 slc26a5 coding downstream 180912 14932537 ~ 14954327 (-)
XLOC_028658 NA coding upstream 60885 15201109 ~ 15206403 (-)
XLOC_028659 plxna4 coding upstream 77705 15217929 ~ 15420452 (-)
XLOC_028660 NA coding upstream 304128 15444352 ~ 15454665 (-)
XLOC_028661 NA coding upstream 329063 15469287 ~ 15472194 (-)
XLOC_028662 chchd3a coding upstream 349991 15490215 ~ 15603588 (-)
XLOC_028648 NA non-coding downstream 241998 14764350 ~ 14893241 (-)
XLOC_028647 BX571719.1 non-coding downstream 390548 14744576 ~ 14744691 (-)
XLOC_028642 NA non-coding downstream 690349 14430963 ~ 14444890 (-)
XLOC_028663 NA non-coding upstream 617211 15757435 ~ 15760591 (-)
XLOC_028664 NA non-coding upstream 772941 15913165 ~ 15974147 (-)

Expression


Co-expression Network