G953971


Basic Information

Item Value
gene id G953971
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21019232 ~ 21019600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1087729
catctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatctgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1087729 True 369 lncRNA 0.45 1 21019232 21019600

Neighbor

gene id symbol gene type direction distance location
cd226 cd226 coding upstream 185850 20821163 ~ 20833382 (+)
rttn rttn coding upstream 198683 20760571 ~ 20820549 (+)
cbln2b cbln2 coding upstream 520227 20495472 ~ 20499005 (+)
LOC110536583 LOC106578430 coding upstream 815472 20201200 ~ 20203760 (+)
mtrr LOC106578438 coding upstream 1184778 19801737 ~ 19834454 (+)
trpc1 trpc1 coding downstream 50165 21069765 ~ 21117062 (+)
LOC110535465 LOC106578468 coding downstream 111883 21131483 ~ 21149309 (+)
LOC110535467 arhg4 coding downstream 228223 21247823 ~ 21325738 (+)
fbxo45 LOC106578473 coding downstream 325876 21345476 ~ 21347872 (+)
nrros LOC106578474 coding downstream 332102 21351702 ~ 21357076 (+)
G953970 NA non-coding upstream 1962 21017019 ~ 21017270 (+)
G953942 NA non-coding upstream 49989 20968882 ~ 20969243 (+)
G953893 NA non-coding upstream 125594 20890268 ~ 20893638 (+)
G953859 NA non-coding upstream 212577 20805942 ~ 20806655 (+)
G953804 NA non-coding upstream 269530 20749492 ~ 20749702 (+)
G953973 NA non-coding downstream 2263 21021863 ~ 21022096 (+)
G953976 NA non-coding downstream 8605 21028205 ~ 21028412 (+)
G953980 NA non-coding downstream 12728 21032328 ~ 21032542 (+)
G953996 NA non-coding downstream 39820 21059420 ~ 21059729 (+)
G954003 chst2 non-coding downstream 44471 21064071 ~ 21066682 (+)
phldb2b tcpe other upstream 1249879 19740565 ~ 19799150 (+)
G951511 NA other upstream 1892147 19126665 ~ 19127085 (+)
G948710 NA other upstream 4417340 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 4473943 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 4683940 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 1706953 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 2645688 23665288 ~ 23665930 (+)
G956797 NA other downstream 2756172 23775772 ~ 23776845 (+)
G957942 NA other downstream 3580871 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 3775000 24794600 ~ 24795736 (+)

Expression


Co-expression Network