XLOC_028658


Basic Information

Item Value
gene id XLOC_028658
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15201109 ~ 15206403 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057340
ataaaaggCAGATGCAGTATATCAGATGGATTTCTTTTCTTCTCCCCCTTGAGGAGCATCTGGATGCAGAATCAGCAGTTTAATTAAAAGGAAAAGGAATCCATTTTCTTCCCCTTGAGGAGCATCTGTACACCGAATCAGCAGGTAATGGATACATTTTACACTCATGTtgaattgtaaataatttattttaattatgatgtCATATTTTCATTT
>TCONS_00057341
ataaaaggCAGATGCAGTATATCAGATGGATTTCTTTTCTTCTCCCCCTTGAGGAGCATCTGGATACAGAATCAGCAGGCAGATGCAGTATATCAGATGGATTTCTTTTCTTCTCCCCCTTAAGGAGCATCTGGACACAGAATCAGCAGGCAGATGCTGGAGGTTAGATGGGTTCTTTTACATCTCCTTGAGGAGCATCTGGATATAGAATCAGCAGGTAATGAATAAACACTCAGGTTGTTCttttaaataattctttaaaatgaTAGGTCATACTTTTCATTTACAGCATTCACTTACATTG
>TCONS_00057342
ataaaaggCAGATGCAGTATATCAGATGGATTTCTTTTCTTCTCCCCCTTGAGGAGCATCTGGATACAGAATCAGCAGGCAGATGCAGTATATCAGATGGATTTCTTTTCTTCTCCCCCTTAAGGAGCATCTGGACACAGAATCAGCAGGTAATGGGTACTTTTAACACTCATGTTGGATTGTAAattattctttaaaattataatgtcatgttttcatttacaTCATTCATTTATGTTGTGCAGGATAAAGAAAtacattattttgtgttaaaattgTTGAAACTAACAGTTAAATTAGTGTTTATTCACTTTAATTAAAGGGATTGTTTTTCCTTCCTCTGATGTAACatctctttaaaatgtttaatggcATTTTCTTTTAACATTTCTAATAGGCAGATGCTGGAGGTTAGATGGGTTCTTTTATATCTCCTTGAGGAGCATCTGGATATAGAATCAGCAGGTAATGAATAAACTCtcaggttgtttttttttttaatgattcttTAAAATGATAGGTCATACTTTTTATTTACAGCATTAATTTACATTGTGCAAGATAAAgagaaacattattttacttaACAATTCTTAAAACTAACGGTTAAATAAgtattcattcaattcaattaacaGTACTTCATCATGTGACTGCGGCAtctaaatttctttatttttgtcagATTTCTCCATCTGATTTAAtgtcttcaattttttttttattaacatttacaaaaGGCAGGTGCAGTATATCAGATACGTTCCTTTTCTTCTCCCCCTTGAGGAGCATCTGGATGCAGAATCAGCAGGTAATGGTTGCATTTAACACTCATGTTGGATTGTaaattattctttaaaatgatacgTTTTATTTACAGCATTCATTTACATTATGCAGGATAaagagattattttatttttatattcttaaaACCAAGTTAAATAAGTTTTCATTCACTTTAATTAAAAGGAATTCATCATGTGACCTCAGCATctgaattttaactttttttttttttcttcagatttcTCTATCTGATGTAAGGTCTTTTAAAAAtggtatttttattaacatttataaaaagcAGATGCAGTATATCAGATGGGTTTTATTTCTCCCCTTTGAGGAGCATCTGGATACAGGTAGGTAGCAGGTAATGGGTACTTTTAACACTCATGTTGGATTGTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057340 False 216 lncRNA 0.34 3 15201109 15206403
TCONS_00057341 False 304 lncRNA 0.39 3 15201657 15206403
TCONS_00057342 True 1192 lncRNA 0.31 2 15205029 15206403

Neighbor

gene id symbol gene type direction distance location
XLOC_028657 AL590150.2 coding downstream 60885 15135239 ~ 15140224 (-)
XLOC_028656 nrf1 coding downstream 97413 15081385 ~ 15103696 (-)
XLOC_028655 BX571796.1 coding downstream 194409 15006216 ~ 15006700 (-)
XLOC_028654 klhdc10 coding downstream 197216 14991789 ~ 15003893 (-)
XLOC_028653 NA coding downstream 220733 14975332 ~ 14980376 (-)
XLOC_028659 plxna4 coding upstream 11526 15217929 ~ 15420452 (-)
XLOC_028660 NA coding upstream 237949 15444352 ~ 15454665 (-)
XLOC_028661 NA coding upstream 262884 15469287 ~ 15472194 (-)
XLOC_028662 chchd3a coding upstream 283812 15490215 ~ 15603588 (-)
XLOC_028663 NA coding upstream 551032 15757435 ~ 15760591 (-)
XLOC_028648 NA non-coding downstream 307868 14764350 ~ 14893241 (-)
XLOC_028647 BX571719.1 non-coding downstream 456418 14744576 ~ 14744691 (-)
XLOC_028664 NA non-coding upstream 706762 15913165 ~ 15974147 (-)
XLOC_028666 NA non-coding upstream 797497 16003900 ~ 16025255 (-)

Expression


Co-expression Network