G954003 (chst2)


Basic Information

Item Value
gene id G954003
gene name chst2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21064071 ~ 21066682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1087763
AGTTTAATGATTGTCTCTGAGTCCATCCATGACTCACAATGTAACATAACCTGCTCAAACAATTAGCTTTTTGATGAATTAATGCAGGATTATTTTCATTCACTGGTTTTTCACTTTTACAAACATTATGGATAGTGGAAAACCAAATCTTTTCTCAGGTTTTGAACATTCAAAATAACTCCCAAAACATCCACTTTGAAGTGTTTTCATAACAAGATACATGAATCatacagtgtttgtttgtttCCATAGTTGCAGTTCAATATTCAAGTCATTGTTCATAGGCCTTCAGGCTTTGTCAGAAACATCCAGTTTACCAGACACCAAAGTAATGGTCCTGTCAAATACAACTGTCTGTAATTGAACTGAAAAATAAAACTAAGATACATTCCAATGTGGCCAAGAAGTGGAATTCCTCAAAAACACTGATTCAAAGTAAAGCTTTATAATTCCACGATTAACGGAATGGCACTAGATGCAAAATTACATTGAATTCACTGTCTTTGGTGGaaagaaaaaataaatgtttttctgtCACAGTTTGGAGACCGTCAGTAAAGACTTACTGAGGTCCTTGGCCTCCCCGGCCGTCCTGACTCTCTCGTAGCCCAGGACAGCCATGGAGTGATGACAGTAGTCCTCCACCTGTTTGATCTGCTGGATGCTGAGCACTGTTCTCCATGCGCTGGCAGCCTGAGTGGCGTTCCTGGAGGACACTATGAACGGCTTGGAGGACGAACTAGACCCACCCGTCATGTTCAGAGCAAACGACTCAATGTCATGGTTGGTGGTGAGGTTGGCGAAGCGGTAGATGTTCCTCAGGATCTTCACAGGGTTCTCCACCAGGTCCTCATAACGCACGGCCATGTACTTCCCTTTGAGCCAACTGGGAGGGTTTAAGGCCGTCCTCAGGGTCCGGGAGGTGCGGTCACAGATCACCTCCATGGCGCCGATGGAGTGGTAGTCCGAGCCGTCCTTCTTGTTGGTTTTGTGGTTGGGGTCGACAAAGGGGATCCTGCGGAGCTTGGGGTCCCTGCTCCGGACCACCTGCAGGTTCTCCCGGATCAGCCCATGTCGGGACTTGATCCTGGAGTTGGCCACGGCCCGGGGGTCCCTGACCAGGTGAACTACCTTCACGTCCAGCGACGGGTCCTCCATGAGGGGGGCTAGAACGTTAACGTCCAGGATACGCACCCCTTTAATAACAATAGTGCTGTACTTGAGGCACTCCTCCTCCAGTAGTCTAAGGCTTTGAGGTGGGCACTTTTTACACACCTTGTCGTCCACCATCCCCACCACCTCTTTCCTGTAGGCAGAGCAGAGGGGGTAGGAGCACACCACCTTATTCAGGGTGGCCCCAAAGAGTCCTAGGGAAGTAAAGTTCTTTCCCCCTGGGCTGTTGTACAGCTGGAACACAGAGAGATCACAGCGGTATAAGGAGCTGAGCATGTCCCTGGCTGCCCCCTGCAAAGACACTGCATCTCCCGGGTACAGCTTCTGCCAGATGTGCCACATGGGTTCATACAGGAAGAACACTTCAGGATTTTGGTTAAACAGCTCCCCGAAAAAGGAGGACCCAGACCTCCATGTGGTCAGAACATAGACCAACTGTCTTTTCTTGGCCAGAGAGGGTCTGTAGAGGAACCGGATGTCTGATCTGCCATGATAGGTAGTACTCCTCATCTGGTGATTGCACTGCTGGGGCTCTTTAGTCCATTTATAGTTGGCCAAGTTCAGCATGGTCAGCACCAGCAGCAAGAAATAAGCTATAAACAACACAATCCGCTTTCTGCGTAGCACCTTCATCACAATGCCGGGCTGGGCTATTATCTTGGTATGGTTCCTGTACGTTTTGAGCTTTCTCCCGTAGCCAGCATCCTTCTCCCAAGGCGCTGTCAACTTCAGTTGTTGGTGGTATTGTTTCCCTCTCATCTGTAACCTAGGAGTGAGTGGCTCTCACCACTGGGAGAAAGCTTCTTACATTTACAATAGGCGAACCCGTACAGCGTATTGAATATCTCCGGTGGGAATTGATACCGACCGAATCCAATGCTAAATGATTAGGTAATACCCCAGCCAACAGATTCGATATCACAATACGATTCGCGATCCAAAATACGATAACGCCGCTCTGCCTTTACTGCAGTGCGCAAGGCTCTTCACATGAAAATGTTTCCATTACGGGTATTACAGTGCGTATTGCGTTAGGCCTGCCATCAAAAAACAAAACGAAGAACCGTTCATGCAAACAATTTACGCCCTCCTTGACAATATTCAGTGTAGGCATCTCAGCGCAGTTAAAATCTGATGCGCCCCGGTATAGATGGAGCCTATATGAACATTGTACCACAGCACACAAGTAATACGTTAGAAATTACGCGCTCCAGCTTCTTCTTGAATAATGCCGCTAAATGTCGCAGGTATATCCAGAGGTGAGTCTATTCGTCCAAAGAATCAAATATTTCCATTATTCCTGATGTGCTGTATTGTATCTCTTAACCATTGAAACAGGACTGATTTAAT
>TU1087764
AGTTTAATGATTGTCTCTGAGTCCATCCATGACTCACAATGTAACATAACCTGCTCAAACAATTAGCTTTTTGATGAATTAATGCAGGATTATTTTCATTCACTGGTTTTTCACTTTTACAAACATTATGGATAGTGGAAAACCAAATCTTTTCTCAGGTTTTGAACATTCAAAATAACTCCCAAAACATCCACTTTGAAGTGTTTTCATAACAAGATACATGAATCatacagtgtttgtttgtttCCATAGTTGCAGTTCAATATTCAAGTCATTGTTCATAGGCCTTCAGGCTTTGTCAGAAACATCCAGTTTACCAGACACCAAAGTAATGGTCCTGTCAAATACAACTGTCTGTAATTGAACTGAAAAATAAAACTAAGATACATTCCAATGTGGCCAAGAAGTGGAATTCCTCAAAAACACTGATTCAAAGTAAAGCTTTATAATTCCACGATTAACGGAATGGCACTAGATGCAAAATTACATTGAATTCACTGTCTTTGGTGGaaagaaaaaataaatgtttttctgtCACAGTTTGGAGACCGTCAGTAAAGACTTACTGAGGTCCTTGGCCTCCCCGGCCGTCCTGACTCTCTCGTAGCCCAGGACAGCCATGGAGTGATGACAGTAGTCCTCCACCTGTTTGATCTGCTGGATGCTGAGCACTGTTCTCCATGCGCTGGCAGCCTGAGTGGCGTTCCTGGAGGACACTATGAACGGCTTGGAGGACGAACTAGACCCACCCGTCATGTTCAGAGCAAACGACTCAATGTCATGGTTGGTGGTGAGGTTGGCGAAGCGGTAGATGTTCCTCAGGATCTTCACAGGGTTCTCCACCAGGTCCTCATAACGCACGGCCATGTACTTCCCTTTGAGCCAACTGGGAGGGTTTAAGGCCGTCCTCAGGGTCCGGGAGGTGCGGTCACAGATCACCTCCATGGCGCCGATGGAGTGGTAGTCCGAGCCGTCCTTCTTGTTGGTTTTGTGGTTGGGGTCGACAAAGGGGATCCTGCGGAGCTTGGGGTCCCTGCTCCGGACCACCTGCAGGTTCTCCCGGATCAGCCCATGTCGGGACTTGATCCTGGAGTTGGCCACGGCCCGGGGGTCCCTGACCAGGTGAACTACCTTCACGTCCAGCGACGGGTCCTCCATGAGGGGGGCTAGAACGTTAACGTCCAGGATACGCACCCCTTTAATAACAATAGTGCTGTACTTGAGGCACTCCTCCTCCAGTAGTCTAAGGCTTTGAGGTGGGCACTTTTTACACACCTTGTCGTCCACCATCCCCACCACCTCTTTCCTGTAGGCAGAGCAGAGGGGGTAGGAGCACACCACCTTATTCAGGGTGGCCCCAAAGAGTCCTAGGGAAGTAAAGTTCTTTCCCCCTGGGCTGTTGTACAGCTGGAACACAGAGAGATCACAGCGGTATAAGGAGCTGAGCATGTCCCTGGCTGCCCCCTGCAAAGACACTGCATCTCCCGGGTACAGCTTCTGCCAGATGTGCCACATGGGTTCATACAGGAAGAACACTTCAGGATTTTGGTTAAACAGCTCCCCGAAAAAGGAGGACCCAGACCTCCATGTGGTCAGAACATAGACCAACTGTCTTTTCTTGGCCAGAGAGGGTCTGTAGAGGAACCGGATGTCTGATCTGCCATGATAGGTAGTACTCCTCATCTGGTGATTGCACTGCTGGGGCTCTTTAGTCCATTTATAGTTGGCCAAGTTCAGCATGGTCAGCACCAGCAGCAAGAAATAAGCTATAAACAACACAATCCGCTTTCTGCGTAGCACCTTCATCACAATGCCGGGCTGGGCTATTATCTTGGTATGGTTCCTGTACGTTTTGAGCTTTCTCCCGTAGCCAGCATCCTTCTCCCAAGGCGCTGTCAACTTCAGTTGTTGGTGGTATTGTTTCCCTCTCATCTGTAACCTAGGAGTGAGTGGCTCTCACCACTGGGAGAAAGCTTCTTACATTTACAATAGGCGAACCCGTACAGCGTATTGAATATCTCCGGTGGGAATTGATACCGACCGAATCCAATGCTAAATGATTAGGTAATACCCCAGCCAACAGATTCGATATCACAATACGATTCGCGATCCAAAATACGATAACGCCGCTCTGCCTTTACTGCAGTGCGCAAGGCTCTTCACATGAAAATGTTTCCATTACGGGTATTACAGTGCGTATTGCGTTAGGCCTGCCATCAAAAAACAAAACGAAGAACCGTTCATGCAAACAATTTACGCCCTCCTTGACAATATTCAGTGTAGGCATCTCAGCGCAGTTAAAATCTGATGCGCCCCGGTATAGATGGAGCCTATATGAACATTGTACCACAGCACACAAGTAATACGTTAGAAATTACGCGCTCCAGCTTCTTCTTGAATAATGCCGCTAAATGTCGCAGGTATATCCAGAGGTGAGTCTATTCGTCCAAAGAATCAAATATTTCCATTATTCCTGATGTGCTGTATTGTATCTCTTAACCATTGAAACAGGACTGATTTAATCAGAGTACAGGGAGAAAAGCCCTCCCTTCTCTAAACGCCATTGGAGCATGATAGGATACGTGCATAAACGAGTTACGCCCTTGGTTCTT

Function

symbol description
chst2 Enables N-acetylglucosamine 6-O-sulfotransferase activity. Involved in N-acetylglucosamine metabolic process and sulfur compound metabolic process. Located in cytosol; nucleoplasm; and trans-Golgi network.

NR:

description
carbohydrate sulfotransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1087763 False 2523 lncRNA 0.47 1 21064071 21066593
TU1087764 True 2612 lncRNA 0.47 1 21064071 21066682

Neighbor

gene id symbol gene type direction distance location
cd226 cd226 coding upstream 230689 20821163 ~ 20833382 (+)
rttn rttn coding upstream 243522 20760571 ~ 20820549 (+)
cbln2b cbln2 coding upstream 565066 20495472 ~ 20499005 (+)
LOC110536583 LOC106578430 coding upstream 860311 20201200 ~ 20203760 (+)
mtrr LOC106578438 coding upstream 1229617 19801737 ~ 19834454 (+)
trpc1 trpc1 coding downstream 3083 21069765 ~ 21117062 (+)
LOC110535465 LOC106578468 coding downstream 64801 21131483 ~ 21149309 (+)
LOC110535467 arhg4 coding downstream 181141 21247823 ~ 21325738 (+)
fbxo45 LOC106578473 coding downstream 278794 21345476 ~ 21347872 (+)
nrros LOC106578474 coding downstream 285020 21351702 ~ 21357076 (+)
G953996 NA non-coding upstream 4342 21059420 ~ 21059729 (+)
G953980 NA non-coding upstream 31529 21032328 ~ 21032542 (+)
G953976 NA non-coding upstream 35659 21028205 ~ 21028412 (+)
G953973 NA non-coding upstream 41975 21021863 ~ 21022096 (+)
G953971 NA non-coding upstream 44471 21019232 ~ 21019600 (+)
G954005 NA non-coding downstream 1772 21068454 ~ 21068675 (+)
G954009 NA non-coding downstream 10517 21077199 ~ 21077622 (+)
G954011 NA non-coding downstream 13252 21079934 ~ 21080323 (+)
G954048 NA non-coding downstream 109227 21175909 ~ 21177113 (+)
G954059 NA non-coding downstream 133292 21199974 ~ 21203342 (+)
phldb2b tcpe other upstream 1294718 19740565 ~ 19799150 (+)
G951511 NA other upstream 1936986 19126665 ~ 19127085 (+)
G948710 NA other upstream 4462179 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 4518782 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 4728779 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 1659871 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 2598606 23665288 ~ 23665930 (+)
G956797 NA other downstream 2709090 23775772 ~ 23776845 (+)
G957942 NA other downstream 3533789 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 3727918 24794600 ~ 24795736 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000070_00763075_00764472 CHST2, CHST2B coding CI01000070 null 761784 ~ 764956 (+)