G954005


Basic Information

Item Value
gene id G954005
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21068454 ~ 21068675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1087769
GCTGGGGTAAAGGAGATATTTCAATTCCTGTTGGGTGCGGTAAACCTTTGGATATTATGTAGGCTACTGCACCTGTTGTCAATGATTTATGTCTTATAGAAAAATAAGTTAAATAAACTTAATTGATTAATTGTTAAATGTATTATTTgaacttttatctcttattcttatccagaTTTTTTAAAACAGcattgtcggttaggggctcgtgagTAAAgcaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1087769 True 222 lncRNA 0.32 1 21068454 21068675

Neighbor

gene id symbol gene type direction distance location
cd226 cd226 coding upstream 235072 20821163 ~ 20833382 (+)
rttn rttn coding upstream 247905 20760571 ~ 20820549 (+)
cbln2b cbln2 coding upstream 569449 20495472 ~ 20499005 (+)
LOC110536583 LOC106578430 coding upstream 864694 20201200 ~ 20203760 (+)
mtrr LOC106578438 coding upstream 1234000 19801737 ~ 19834454 (+)
trpc1 trpc1 coding downstream 1090 21069765 ~ 21117062 (+)
LOC110535465 LOC106578468 coding downstream 62808 21131483 ~ 21149309 (+)
LOC110535467 arhg4 coding downstream 179148 21247823 ~ 21325738 (+)
fbxo45 LOC106578473 coding downstream 276801 21345476 ~ 21347872 (+)
nrros LOC106578474 coding downstream 283027 21351702 ~ 21357076 (+)
G954003 chst2 non-coding upstream 1772 21064071 ~ 21066682 (+)
G953996 NA non-coding upstream 8725 21059420 ~ 21059729 (+)
G953980 NA non-coding upstream 35912 21032328 ~ 21032542 (+)
G953976 NA non-coding upstream 40042 21028205 ~ 21028412 (+)
G953973 NA non-coding upstream 46358 21021863 ~ 21022096 (+)
G954009 NA non-coding downstream 8524 21077199 ~ 21077622 (+)
G954011 NA non-coding downstream 11259 21079934 ~ 21080323 (+)
G954048 NA non-coding downstream 107234 21175909 ~ 21177113 (+)
G954059 NA non-coding downstream 131299 21199974 ~ 21203342 (+)
G954060 NA non-coding downstream 131384 21200059 ~ 21202150 (+)
phldb2b tcpe other upstream 1299101 19740565 ~ 19799150 (+)
G951511 NA other upstream 1941369 19126665 ~ 19127085 (+)
G948710 NA other upstream 4466562 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 4523165 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 4733162 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 1657878 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 2596613 23665288 ~ 23665930 (+)
G956797 NA other downstream 2707097 23775772 ~ 23776845 (+)
G957942 NA other downstream 3531796 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 3725925 24794600 ~ 24795736 (+)

Expression


Co-expression Network