G954060


Basic Information

Item Value
gene id G954060
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21200059 ~ 21202150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1087829
gctactagttCTGTCCtcatccatactgctactaatactgctgctgctaccAGTTCTGTCCtcatccatactgctactaatactgctgctgctactagttCTGTCCtcatccatactgctactaatactactgctgctaccactTCTGTCCtcatccatactgctactaatactgctgctgctactagttCTGTCCtcatccatactgctactaatactgctgctgctaccagtTCTGTTCTCATa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1087829 True 246 lncRNA 0.45 2 21200059 21202150

Neighbor

gene id symbol gene type direction distance location
LOC110535465 LOC106578468 coding upstream 50750 21131483 ~ 21149309 (+)
trpc1 trpc1 coding upstream 82997 21069765 ~ 21117062 (+)
cd226 cd226 coding upstream 366677 20821163 ~ 20833382 (+)
rttn rttn coding upstream 379510 20760571 ~ 20820549 (+)
cbln2b cbln2 coding upstream 701054 20495472 ~ 20499005 (+)
LOC110535467 arhg4 coding downstream 45673 21247823 ~ 21325738 (+)
fbxo45 LOC106578473 coding downstream 143326 21345476 ~ 21347872 (+)
nrros LOC106578474 coding downstream 149552 21351702 ~ 21357076 (+)
LOC110536585 vav3 coding downstream 221274 21423424 ~ 21550872 (+)
col11a1a col11a1 coding downstream 1013709 22215859 ~ 22304517 (+)
G954048 NA non-coding upstream 22946 21175909 ~ 21177113 (+)
G954011 NA non-coding upstream 119736 21079934 ~ 21080323 (+)
G954009 NA non-coding upstream 122437 21077199 ~ 21077622 (+)
G954005 NA non-coding upstream 131384 21068454 ~ 21068675 (+)
G954003 chst2 non-coding upstream 133377 21064071 ~ 21066682 (+)
G953832 NA non-coding downstream 96402 21298552 ~ 21408884 (+)
G954106 NA non-coding downstream 133013 21335163 ~ 21337132 (+)
G953836 sh3glb1 non-coding downstream 173955 21376105 ~ 21395909 (+)
G954194 NA non-coding downstream 297241 21499391 ~ 21501315 (+)
phldb2b tcpe other upstream 1430706 19740565 ~ 19799150 (+)
G951511 NA other upstream 2072974 19126665 ~ 19127085 (+)
G948710 NA other upstream 4598167 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 4654770 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 4864767 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 1524403 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 2463138 23665288 ~ 23665930 (+)
G956797 NA other downstream 2573622 23775772 ~ 23776845 (+)
G957942 NA other downstream 3398321 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 3592450 24794600 ~ 24795736 (+)

Expression


Co-expression Network