G953832


Basic Information

Item Value
gene id G953832
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21298552 ~ 21408884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1087562
ctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctctgctatATATGGGCGGGGTCTCCTCTCTCTGACAAGCTGGCTTAGCAAAGGCCTTCTGCCACACAGCTGATAAAGCCTGGAGACCATCACTACAGAATTTACGTCGCCAGGGAGACAGGAAAGGGAAACTCCCCGTCAGATGTTACAACATGAGATAAGTTGACTTTGTAGAGAACTCAGAGCTTGAGATGTAATCTAAACACTTTGCGCTGACTGACTGAACACAATGCACCAGATAAATgatattgcccccccccccctctttctcttcacctcgctctctctctttctctctttctctctttctctctttatctctctctttctctctttctctctttctctctctctctcctctcacatgtAGACATTCTGTGAATCAGTGCACGGACCAGATTTGAAGATAAAAAACAAGACACCTTGAAGATCTGGATACAATTATCTCCGATACAGCCGGTTACCTGCTGTGGTGCCTGCTGGGTAAGAGGAAGTGGGTGAGAGGGATCAAATGACTTCCCCTCATTactcatagacagacacacattgATACACCGATGTTCCTCCTGTTGGAAGGGCTGTGTTGTGTTGCCTCAGTTCACTGATGACTAGCAGTGAGTTTACCATAACACCTAGTGAAATATTTAACATACAAAAACAATACGAGGAAAATATAAGAGGAAAATAAGAGGAAAATGTAATGATGAAGTAGCCTTAAAATAAAATGTGCTGTCACTACTTTGTCAGTACACATAGTTATTGAGTCTCCTATGGTTATCCGACGTATACAGATTGAAATGTACACATTTTTAAAGGCTGGACTCTTGTAATGTAGGCCTATGCAATTTAAGCAAACTTAAGCCATTAACAGGTTGTAGTTTTGAATGCTGATCTGACTAGCCATGGCCTCCGGTTAGAGAGAGCATCGCAGTTGTTTTAAATTATGTCAGCCATGTAAATAAGTAATAGTCGATGTTAGCAAAGTCACTATCTCTGATTTTACAAGTGCATATAATGCAATTCAGTCACACTGCTCTCAGTTATAACATCTAGTAGTCAACTTTCACCACATCTTATAGCCAGAGCCATGCAAACCCATGAAAGATTTTACACTGCATTACATCTTATATTCCTGTTTTCATAACCACACTCCATGTCAAAGATATTAAGATATTGGCTTCATTTTATGCAGAGAGTACATTCAAAATCAGCAGAGGAGCCATTGAGAACATGGTAATATGGAAGTCAGCAATTTTAAGAAAACAGACTAACTCCTTTGAGGGAGGGATAAGTTGCAGTCCCTTCAGTTGTTTCAGCACGGTAAATCTTTGTGTTTCTGTTATTTCACTTCAACAGAACCCatgccagagagagaaagagatagagagtatTGAAACTTGCTGAAATTCATTTCCTCTTTTGCAAAATACATTTCTGTTCTTTAAATTATTGCAAGCCCTCAGTTTCTCTAACCGGAGCAGAGGTTATTTCAACTGAAAAACCACCCAAAACCATAGAGACAGCATTTCAGAGCTGTAGCTAAGGTGAAGTAAACAACTGCAATATGTGATAAGTTAATAATTTCCTATACATGCAAGCACCACAACACACAAATGCTATTTGTAATCTTCCTCATTTAGTTTAGATGCTATGTTAATTCATTTTATGTACTCAGTTACCTCAAATATGGTTCACAAGTATCCATCCTCTTTTAATCCTAATGTATACATGACAAGAATATTCCATATTCCATATACTCATCATTTTGCAACATACTGCAGCTTTGACAGAGCAACAAGGTTCAAGTTACATCCGTCAAATGTTACTTTAGAATGTAACTTTCATAAACTGTTTTGTCAAAGTACAACTGTGTTATAAAATGGGCTTACAAagcaattgtaaaaaaaaaacaaaaaaaaaacgtcatCAATACATAATTCATATTCCCAAATAATATGTTGGACTGGTTATGTTAATCAGCTTTAGCAAtacatttatttagtaaatacattTGCATAACTGCCAAGTCTAGGCTTGCTGTGAGCCTACAACTTTCTTATTGTCCCCCCAGCACCACACTGATGTTGTTTTGAAAACTTGACTGACGTTGTGTCATCTGACGCTGGAGGACTGCCCAGATATACTGAGACGGTTATAACACTGCAACGATGACTCATGAAAAAGACCAGAGGTCTGAGAGAGACCGGTAGGGGGGCATATATTCTGATCTGTTATTGCATCGCTCAGGTTTAAGATAAGATGGTTTAATAAAATATGTTACTCAGTGAAACCATGGTAACCTTTTTTGAATATAGTGTTTGCTCCCAGGACACTCATGTGGGTGACCCCCTCCATTTCCATGTTTGTATGCTTTCCACTCCACTGCTTTGTCCATCAGTTATACACAGCTGATGCCCTCTGGCCGCCTGATCTGATCCCCCTCATCCTAACCCTCTCCTGGGTCTCCCAGCCAATTGatttgtcaggtctctcctggccCTTTTAGACCAGCCACATACTGACAGTGTTAGGGTTATATCATTCAGACGATCAATACAGGAGAAAAAAACAATGATTGCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1087562 True 2667 lncRNA 0.40 3 21298552 21408884

Neighbor

gene id symbol gene type direction distance location
LOC110535465 LOC106578468 coding upstream 149243 21131483 ~ 21149309 (+)
trpc1 trpc1 coding upstream 181490 21069765 ~ 21117062 (+)
cd226 cd226 coding upstream 465170 20821163 ~ 20833382 (+)
rttn rttn coding upstream 478003 20760571 ~ 20820549 (+)
cbln2b cbln2 coding upstream 799547 20495472 ~ 20499005 (+)
LOC110536585 vav3 coding downstream 14540 21423424 ~ 21550872 (+)
col11a1a col11a1 coding downstream 806975 22215859 ~ 22304517 (+)
olfm3a olfm3 coding downstream 917205 22326089 ~ 22356408 (+)
LOC118937330 NA coding downstream 937109 22345993 ~ 22349256 (+)
LOC110535481 LOC105022597 coding downstream 983511 22392395 ~ 22405735 (+)
LOC110535467 arhg4 non-coding upstream 34588 21247823 ~ 21325738 (+)
G954059 NA non-coding upstream 95210 21199974 ~ 21203342 (+)
G954060 NA non-coding upstream 96402 21200059 ~ 21202150 (+)
G954048 NA non-coding upstream 121439 21175909 ~ 21177113 (+)
G954011 NA non-coding upstream 218229 21079934 ~ 21080323 (+)
G954194 NA non-coding downstream 90507 21499391 ~ 21501315 (+)
G954212 NA non-coding downstream 136017 21544901 ~ 21552937 (+)
G954709 NA non-coding downstream 168251 21577135 ~ 21577541 (+)
G954710 NA non-coding downstream 168720 21577604 ~ 21577865 (+)
G954714 NA non-coding downstream 175554 21584438 ~ 21586293 (+)
phldb2b tcpe other upstream 1529199 19740565 ~ 19799150 (+)
G951511 NA other upstream 2171467 19126665 ~ 19127085 (+)
G948710 NA other upstream 4696660 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 4753263 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 4963260 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 1317669 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 2256404 23665288 ~ 23665930 (+)
G956797 NA other downstream 2366888 23775772 ~ 23776845 (+)
G957942 NA other downstream 3191587 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 3385716 24794600 ~ 24795736 (+)

Expression


Co-expression Network