G954578


Basic Information

Item Value
gene id G954578
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21347217 ~ 21348853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1088417
CCAACACTTGTCACCTGGGGCATAGGAAATTACATTGCGCTGCAGTTAACTCACAAACACCAATTGTATGAGAAAGTCAGACAAAACAGAAATCATTTGATTGTAGATAAAAGGGAGAGTACAATATGACTAGAGACATTGAAAGGTGGCTTTCAATTTGGGAAATAAGTAAAATAATGtcctatttgtatttattgtggatccccattagctgctgctgccaaggggtccagcaaaattaaggcagtttatacaattaaaaaaaaaaacattacaatacattcacagatttcacaacaaaTATCATTGGGTGGTTCTTATTTTATATAGAATATAGAAGTCAATGATTGCCCTCTTGTGGAAGCATTATGAAacactcaatcaatcaattacaGACTGGCACCAGgtagacttttattttgaaggttcCATGACCTCTTCAATAGTACCACGAATTAAAACCTATAAATAAATATAAGGAAATACTATGATGAATACCACCACAATTAAAATGGATTCACAGTAGCATGGTCTCCTCACTTCTGCTCTCCTATACAATGTATCTGAAGAGAGGAGACATTTCAGTTATACTGCAATGACTAgcttttctaCTGAAGCAGTCTTTTCCAAGTGTCCCATTCGGCATAGTCCTCTGAAGTGTCCCCCTTGCTGTTCCATCCATGGCAGTTACACGTGCACTCTAGAAATGTTACAGCTTGcagtgtcacacacacattatgaTTTGTCTTTATTTGCCACAGTTCATATTTGGTTTTGCCTCATAGGAACAGACATCATAAAACCGTCCGCATGTACAGGACTCAGTGTTGTTACTtcataaaataacattaaaaaaataagTCCTCCCGTACTGTAAATAAAATGGTCCAGCAGCTGAAGTGGATAGGATCCACATTGAGTCAGAAACACCTTTGAAACAGCCCCCAGTCCCCCACCAATTATCACTTCCCAAAAACCTAGTCAAACCCTTTTGTCCATCAATGATCACTTCCCCCACCCTGGTCAAATTCTCTTGTCCATCAATAGTTCACTCTCATCCATGTTGATTTTGTAGTCCATTCCTGTGGTTGTGGAATGTTCGTTTAGAATCCTCTCGGTGTCAACGATCAGTCATTATCCTTGGCACATCTGATGTGACGTGGCACCAGCGGGTGTTGTGGCGGTGCTATCCATCCAGAGGCTTGCCAAGGTAGACCATGGTCACCTCAGTGTTGCCATAGACAGCTGAGACGGCCGGGAAGAGGCAGGCTTTAGGCAGCCCTCTGAAGGCCACTCCCAGAAACTCAAAGCCTCTTTCGAAGGCCAAGGTCTTGTTATCCATGTCAAGAATCACTCGTATCCTCTCCCCGAT
>TU1088418
tgggaccaacacattacatgttgcgtttatatttttgttcagtttatatcAGAAACCTGCCAACACTTGTCACCTGGGGCATAGGAAATTACATTGCGCTGCAGTTAACTCACAAACACCAATTGTATGAGAAAGTCAGACAAAACAGAAATCATTTGATTGTAGATAAAAGGGAGAGTACAATATGACTAGAGACATTGAAAGGTGGCTTTCAATTTGGGAAATAAGTAAAATAATGtcctatttgtatttattgtggatccccattagctgctgctgccaaggggtccagcaaaattaaggcagtttatacaattaaaaaaaaaaacattacaatacattcacagatttcacaacaaaTATCATTGGGTGGTTCTTATTTTATATAGAATATAGAAGTCAATGATTGCCCTCTTGTGGAAGCATTATGAAacactcaatcaatcaattacaGACTGGCACCAGgtagacttttattttgaaggttcCATGACCTCTTCAATAGTACCACGAATTAAAACCTATAAATAAATATAAGGAAATACTATGATGAATACCACCACAATTAAAATGGATTCACAGTAGCATGGTCTCCTCACTTCTGCTCTCCTATACAATGTATCTGAAGAGAGGAGACATTTCAGTTATACTGCAATGACTAgcttttctaCTGAAGCAGTCTTTTCCAAGTGTCCCATTCGGCATAGTCCTCTGAAGTGTCCCCCTTGCTGTTCCATCCATGGCAGTTACACGTGCACTCTAGAAATGTTACAGCTTGcagtgtcacacacacattatgaTTTGTCTTTATTTGCCACAGTTCATATTTGGTTTTGCCTCATAGGAACAGACATCATAAAACCGTCCGCATGTACAGGACTCAGTGTTGTTACTtcataaaataacattaaaaaaataagTCCTCCCGTACTGTAAATAAAATGGTCCAGCAGCTGAAGTGGATAGGATCCACATTGAGTCAGAAACACCTTTGAAACAGCCCCCAGTCCCCCACCAATTATCACTTCCCAAAAACCTAGTCAAACCCTTTTGTCCATCAATGATCACTTCCCCCACCCTGGTCAAATTCTCTTGTCCATCAATAGTTCACTCTCATCCATGTTGATTTTGTAGTCCATTCCTGTGGTTGTGGAATGTTCGTTTAGAATCCTCTCGGTGTCAACGATCAGTCATTATCCTTGGCACATCTGATGTGACGTGGCACCAGCGGGTGTTGTGGCGGTGCTATCCATCCAGAGGCTTGCCAAGGTAGACCATGGTCACCTCAGTGTTGCCATAGACAGCTGAGACGGCCGGGAAGAGGCAGGCTTTAGGCAGCCCTCTGAAGGCCACTCCCAGAAACTCAAAGCCTCTTTCGAAGGCCAAGGTCTTGTTATCCATGTCAAGAATCACTCGTATCCTCTCCCCGAT

Function

NR:

description
PREDICTED: F-box/SPRY domain-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1088417 False 1372 lncRNA 0.41 2 21347217 21348794
TU1088418 True 1431 lncRNA 0.41 2 21347217 21348853
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110535470 LOC106578472 coding downstream 3995 21335137 ~ 21343222 (-)
LOC118937470 NA coding downstream 144749 21201545 ~ 21202468 (-)
pcolce2b pcolce2 coding downstream 216771 21117874 ~ 21130446 (-)
LOC110535463 chst2 coding downstream 280443 21064048 ~ 21066774 (-)
dok6 dok6 coding downstream 430828 20835505 ~ 20916389 (-)
sh3glb1a sh3glb1 coding upstream 27348 21376201 ~ 21395925 (-)
crj1a crj1a coding upstream 49921 21398774 ~ 21408418 (-)
LOC110536586 ntng1 coding upstream 236589 21584195 ~ 21848359 (-)
prmt6 prmt6 coding upstream 505469 21854322 ~ 21855703 (-)
LOC110535477 LOC106578483 coding upstream 793985 22142838 ~ 22161997 (-)
G954571 arhg4 non-coding downstream 27834 21312827 ~ 21319383 (-)
G954573 arhg4 non-coding downstream 29879 21315023 ~ 21317338 (-)
G954540 NA non-coding downstream 83253 21263613 ~ 21263964 (-)
G954537 NA non-coding downstream 89572 21257291 ~ 21257645 (-)
G954535 NA non-coding downstream 91725 21255157 ~ 21255492 (-)
G954595 LOC100194703 non-coding upstream 31617 21380470 ~ 21381111 (-)
G954679 NA non-coding upstream 181019 21529872 ~ 21530955 (-)
G954689 NA non-coding upstream 198026 21546879 ~ 21550857 (-)
G954912 NA non-coding upstream 219090 21567943 ~ 21568173 (-)
G954916 NA non-coding upstream 223633 21572486 ~ 21573333 (-)
G954484 arhgef4 other downstream 93908 21246014 ~ 21253309 (-)
G954441 NA other downstream 268559 21077650 ~ 21078658 (-)
G952255 LOC106578453 other downstream 1932481 19401554 ~ 19414736 (-)
dap dap other downstream 2483442 18849188 ~ 18863855 (-)
G951713 NA other downstream 2575634 18769814 ~ 18771583 (-)
G954919 NA other upstream 230730 21579583 ~ 21579828 (-)
G956234 LOC106578494 other upstream 1404427 22753280 ~ 22756973 (-)
G956366 NA other upstream 1658297 23007150 ~ 23043985 (-)
G957170 NA other upstream 2375126 23723979 ~ 23724418 (-)
G957157 LOC106578515 other upstream 2397627 23746480 ~ 23748084 (-)

Expression

G954578 Expression in all Baseline Samples

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G954578 Expression in each Bioproject

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G954578 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network