XLOC_028661


Basic Information

Item Value
gene id XLOC_028661
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15469287 ~ 15472194 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058147
GTAATATACTTGCCCTCGCTGTCCCTGTGTTTCCAGCCTTCAGTACAGAAGCAGTCATCCATAAACCACATCGTCtagatctttatttattttgccacCAATCGACTCCGAGCAGCCTGCCGGACAGCTGCAGCAAGTGAAGTCACTTTACGCTCATTAGCATGGACAAGAGATGAGAccctagacacacacacacacacacacacacacacacacacacaaaacacacacaaatttcCCTCCTTGCGTCTCAGTATGAGAGTGTTGTGCTCTAAAAACTGCTCTCCAGATTTCAGTTGATGTtcatatgtatgcatatatatttatgcTCTGGTATTTTTAAGTGTGTTTGAATGCTCAGGAGGGAGCAAGCAAAATGAACACACTTTCACATGAAAATTAAGGAGGCATTTGAACACATAGTAGAGAGTAGAACAGATGGTATGTGGTTGGATAACTactttaagctttttttataattgcaaaatcatttattcatacaaAAAACACATGAACGTACCATAAAATGTGCATCACAAATAGTATTGTCAGTACTTTGGTGTATAGCAAAGTAACAAATGACTACTGTTATGATTCACCATGGTATGTAGCCAGATAGTTAAAGTTTTTGGGAGGTATTTTGAGTTGGATTCAAAGCAGAAGAACCTGCTTATGCACACAACTTTTAATTTtaagccaggcagcccaaggacttccggtgaactgtctttccattacaaaattgtcacgtttaagatctgatttctgtAAAAATCAGCAGTCTTCACTCCCTGTTAGATATACGacatgaagtgggtctcagatctgacaagaagcactgcactaAACTCCATTTTTCcccgtcatgtctttaaaatatgaccgtTTATTttacccagtattttcaatggaatttctgcacttACCTGTTGCTACTGGCGCTAGTGGTTACAATGATCTTTCATCTTGTTtaatgcttgaacaactaaatgattgcttgagtcta
>TCONS_00058148
GATTACTTCGTGTGGAGTGAGCAGACGGCCCTCGCTGTCCCTGTGTTTCCAGCCTTCAGTACAGAAGCAGTCATCCATAAACCACATCGTCtagatctttatttattttgccacCAATCGACTCCGAGCAGCCTGCCGGACAGCTGCAGCAAGTGAAGTCACTTTACGCTCATTAGCATGGACAAGAGATGAGAccctagacacacacacacacacacacacacacacacacacacaaaacacacacaaatttcCCTCCTTGCGTCTCAGTATGAGAGTGTTGTGCTCTAAAAACTGCTCTCCAGATTTCAGTTGATGTtcatatgtatgcatatatatttatgcTCTGGTATTTTTAAGTGTGTTTGAATGCTCAGGAGGGAGCAAGCAAAATGAACACACTTTCACATGAAAATTAAGGAGGCATTTGAACACATAGTAGAGAGTAGAACAGATGGTATGTGGTTGGATAACTactttaagctttttttataattgcaaaatcatttattcatacaaAAAACACATGAACGTACCATAAAATGTGCATCACAAATAGTATTGTCAGTACTTTGGTGTATAGCAAAGTAACAAATGACTACTGTTATGATTCACCATGGTATGTAGCCAGATAGTTAAAGTTTTTGGGAGGTATTTTGAGTTGGATTCAAAGCAGAAGAACCTGCTTATGCACACAACTTTTAATTTtaagccaggcagcccaaggacttccggtgaactgtctttccattacaaaattgtcacgtttaagatctgatttctgtAAAAATCAGCAGTCTTCACTCCCTGTTAGATATACGacatgaagtgggtctcagatctgacaagaagcactgcactaAACTCCATTTTTCcccgtcatgtctttaaaatatgaccgtTTATTttacccagtattttcaatggaatttctgcacttACCTGTTGCTACTGGCGCTAGTGGTTACAATGATCTTTCATCTTGTTtaatgcttgaacaactaaatgattgcttgagtcta
>TCONS_00058149
gcggttcatttcgctgtggcaacccaagattaataaaggggctaagccaaaaagaaaatgaacgaatggcCAAGCAAACTGATAACATACCAGTAATCTCCTAATAAAGTTAGGTTCCAGTTTCTGACATATAAAGATCCCATTCACCTTCTCTCTGCGTCATGTACTGTCATCTTTCTACTGTTTCTTAAAATATAACCCcctaaaatagcatttaaaacaTGGATGTTGGTGTGAGTCACTTGTTAGTCATGGGCACTCATCATAACCCTGTCTTCGGCTCGAAGTTTTTACCCTCTAACCAGCTCAGCTCGGTCACAAACAACCCAGTGCACTGTGCAAACAAATATCTCAATCTAAGCCACAACCACCCCATCAGTACATTGACAAATCAAGCCAATAAATACTGGCAGCTGAAGTCTGACATAAAATCTGCTGAAACCCAGGGGGAATCCAGTGGTGGAGGTTATAGATGGATGTTGTGCTTAGTTACAGAACAATTTCAGAAAGCCCTGGCCCTCTTCGTAACCtctagtgaagtgtgtgtgtttctactcTTAATGAGACTCTGTGGCCCAAGGACTGCCATTACTACATGCTAAAGTGTGACGTATATCACGAGCCACAGGCCATCAGTACACACACCGTCACACACAGATAATAGACAGCCATTTTGTACACCAAATAATTCCAATTCTGTTCACTACAGGCACATTTCAGGTCCAGAGATCATTGCGGCAGAGGCAGAGCGtggctgaatgactgactggCGGCCGTCATTATCAGACATGTTTGGTCGGACATGCGAGTCCAGACTGAAGGAGGAGGTGAGAAGGGCCCATGTTCAGTGAGCGTGTAATGAAGCCGGGTTTGGATCAGGGTCACTGACTCGAGTGCCATTTATTTCTGAGAGGAGGCTAGTCTGCTGTGCGCTTTAAATTACGGCGGACGGGCTTGGCAAAACCTGGATTACTTCGTGTGGAGTGAGCAGACGGTAATATACTTGTGAGTAGTTGACATGAAATTTTTAAGCAAGGGAGAGCGAAGTCCTGCAATGTGACATGTTAAACTGTAGGATTTTAAACAGgagtgtgttaaaaaaaagaggaaaaaaataatgttttgatcagATTTGTGCCAAATTTCATTAACTTTTGTAGAACCAGTTGCAATTTAGTTTGAATTTGCACATATTTAAgtacttattttacatatttactaattgaatatcaatatattttatgatttttttaatgatcCAATTTAAATAAACCGTATAAAAAAACAGCTGTAGACATTCTGAcattctgattctgatttttttttttttgtaaaccaacaatttaaattattacatataaataattatttaaaacagtcattcttaacagtctttatttaaaacagtcaaagcaTGGTCAACCGTTTGGAAGAGCAGCAATTAAAGAGatataaaaattacattacattacattacattacagtcatgtttttttgtatatgctgTCGTGCATTGATTAGCTTCAGAATTATTTGATAAGTAGAacttacaatatttattaatttacataaatGAGTATGTTATTTAGCATgttgcacttgctgctattgcactgctggttagacctaaactgcatttcatttcgttgcattgtacttgtacatgtgtaatgacaataaagttgaatttaatctaatctaaaaaaaatttttgtagCATATTTCGTTTGTTGCTAGTGTTGTTAACCATAGATATTAACAAATAGCCCCAGATATTTGAGTGGTATTGTAGatttcaaccaaaaaaaaaaagagttcatcTTTTCCATCCATTTGTGATCATGCTCCACAGTGCACTGTGACTCACTGTCTGTGTGTATGCCTGTTAATAATTGTAATTTGTCTCTTCACAGGCCCTCGCTGTCCCTGTGTTTCCAGCCTTCAGTACAGAAGCAGTCATCCATAAACCACATCGTCtagatctttatttattttgccacCAATCGACTCCGAGCAGCCTGCCGGACAGCTGCAGCAAGTGAAGTCACTTTACGCTCATTAGCATGGACAAGAGATGAGAccctagacacacacacacacacacacacacacacacacacacaaaacacacacaaatttcCCTCCTTGCGTCTCAGTATGAGAGTGTTGTGCTCTAAAAACTGCTCTCCAGATTTCAGTTGATGTtcatatgtatgcatatatatttatgcTCTGGTATTTTTAAGTGTGTTTGAATGCTCAGGAGGGAGCAAGCAAAATGAACACACTTTCACATGAAAATTAAGGAGGCATTTGAACACATAGTAGAGAGTAGAACAGATGGTATGTGGTTGGATAACTactttaagctttttttataattgcaaaatcatttattcatacaaAAAACACATGAACGTACCATAAAATGTGCATCACAAATAGTATTGTCAGTACTTTGGTGTATAGCAAAGTAACAAATGACTACTGTTATGATTCACCATGGTATGTAGCCAGATAGTTAAAGTTTTTGGGAGGTATTTTGAGTTGGATTCAAAGCAGAAGAACCTGCTTATGCACACAACTTTTAATTTtaagccaggcagcccaaggacttccggtgaactgtctttccattacaaaattgtcacgtttaagatctgatttctgtAAAAATCAGCAGTCTTCACTCCCTGTTAGATATACGacatgaagtgggtctcagatctgacaagaagcactgcactaAACTCCATTTTTCcccgtcatgtctttaaaatatgaccgtTTATTttacccagtattttcaatggaatttctgcacttACCTGTTGCTACTGGCGCTAGTGGTTACAATGATCTTTCATCTTGTTtaatgcttgaacaactaaatgattgcttgagtcta

Function

GO:

id name namespace
GO:0043269 regulation of ion transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0006811 ion transport biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0015267 channel activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058147 False 1006 lncRNA 0.39 2 15469287 15471200
TCONS_00058148 False 1022 lncRNA 0.39 2 15469287 15471227
TCONS_00058149 True 2908 lncRNA 0.38 1 15469287 15472194

Neighbor

gene id symbol gene type direction distance location
XLOC_028660 NA coding downstream 14622 15444352 ~ 15454665 (-)
XLOC_028659 plxna4 coding downstream 48835 15217929 ~ 15420452 (-)
XLOC_028658 NA coding downstream 262884 15201109 ~ 15206403 (-)
XLOC_028657 AL590150.2 coding downstream 329063 15135239 ~ 15140224 (-)
XLOC_028656 nrf1 coding downstream 365591 15081385 ~ 15103696 (-)
XLOC_028662 chchd3a coding upstream 18021 15490215 ~ 15603588 (-)
XLOC_028663 NA coding upstream 285241 15757435 ~ 15760591 (-)
XLOC_028664 NA coding upstream 440971 15913165 ~ 15974147 (-)
XLOC_028665 mest coding upstream 524040 15996234 ~ 16001215 (-)
XLOC_028666 NA coding upstream 531706 16003900 ~ 16025255 (-)
XLOC_028655 BX571796.1 non-coding downstream 462587 15006216 ~ 15006700 (-)
XLOC_028653 NA non-coding downstream 488911 14975332 ~ 14980376 (-)
XLOC_028667 NA non-coding upstream 562103 16034297 ~ 16037857 (-)
XLOC_028668 NA non-coding upstream 567920 16040114 ~ 16042181 (-)

Expression


Co-expression Network