G954714


Basic Information

Item Value
gene id G954714
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21584438 ~ 21586293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1088559
TCTGCTTTTTAATTTTCATCTGGAGTAGATACAGTAACAAGTTGCACTTTAACACTGTTCGGCAAATAGTACAAAATAattattacatgtattttttgctCTGTCaagaaaataaattgtaaatACACTGATGATTCTCTAAGCACTTTGTCAGCTCAAGTGAACACTAAGCTCTTTGACCAAGGTCTCAGGTAATGCAGATGTCTACAGGTCAAATAAGTACACAGGTAGTCTGGCTATCTTTTGGAGAGGGAGGATATGGGGCTATTACACATGTGCGTCACTAACACCGGACAAAAAAAATCTTTCAACCGACAAGGGTTACAGAGTAACGTTCACAAAAGCACAGGTCAGTGGACAGAGGGGCTGGGTGGGACTGATGGGAGGGGACAGGTGAggaatatagggagagagatatagagaaggATGgagtgggagacagacagagagagagagagagagagagagagagagaaagaacagaaaaggaaaaagagagagcgagagacaattgtatttatttaactaggcaagtccgttaagaacagattcttatttacaatgacggcctacaccggccaaacccagatgatgctgggccaattgtgcgccgccctttgggactcccaatcacggcctgttgtgatatagcctggtgtctgtagtgatgcctctagcgctaagatgcagtgctttagactgctgcgccactcgggagcccaacagaaagagagcgagacagagagaaagagagagggcgacagagagatgagaataagagagaaagaaagcaagagagagagagagagacagacagactgagagagagaggtgggcaaGATTTTTGATCTCCGGATCAAAATCCGGATGGATTTCCTTATATCCACAATGCACTGACAGCAAAGAATGCTTacatttccttttttattttccCTCTGCCTCAATTTCTCTAGTTAGGTTTTATTTTTCAAACAGCCTGTCTGTCCACCCTTCAGCAGCGGTAGGGACAGTTCTATGGAGTTcttcgtcagtcagtcagtcagtcagttcagcCCAGAAGCAGTTCAGTCCAGCCAGCACCAAACCCCAAAGCACCCTAAGACAGGGGCAGCTAGCAGCTGCTGGCCTTGCTAGCTAGAGCTTGCTGTCGCTTATTGGTCGCAGCTGCCGTTGCCGTGGCGATAAGAGAGGAAGTGAACAAAGTGTCTGTCATCTCCAGTCCCTCCTTTTGACAGTTAGGGGGAAAAGTCTCTGGTATGGCTTAGGTCACTGGTGtctgttgtttgacttgtttgactTTTTATGAAGCAAATGCTCAAGTTAAACTCTTTTTAAATATCTggtatttatttttctttattgatttcatttttttaaactctCATTTCTAtatatacttttatttttttactcaaaTTAAAGTTTTGCTTTCATTCTGGCACATTCCCTTATAGACAGCGtgtgtccttgctgtgtctggtGGACagctagtacagtacagtatagtagactaAGCTCATGGTCGTTGTAgatctggttgttgttgttgtagagaAGTTGGTAATTGGGTAGTTTGCTCCAACAGTTCAGTGTAGACCGTGTAGGCCTCTGGTTCTCAGAGCAGGGCGGGCCTGTAGGAGGCCTCTCTGAGCAGCGTCGAGcccagcaggagcagcagcaaggTGGAGAGTGGTGTAGACGAGAGGGCGGCTTGGCCCGAGTCGGGCCCACCACAGCCCCCCAGCTCCGACTCACAGCGGGGTTTCTCACACAGCAGGCCCGTGAATGCTGCGGTACACTGGCACCGCAGGTTGTTCAGACACACA

Function

NR:

description
netrin-G1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1088559 True 1826 lncRNA 0.46 2 21584438 21586293

Neighbor

gene id symbol gene type direction distance location
LOC110536585 vav3 coding upstream 33566 21423424 ~ 21550872 (+)
nrros LOC106578474 coding upstream 227362 21351702 ~ 21357076 (+)
fbxo45 LOC106578473 coding upstream 236566 21345476 ~ 21347872 (+)
LOC110535467 arhg4 coding upstream 258700 21247823 ~ 21325738 (+)
LOC110535465 LOC106578468 coding upstream 435129 21131483 ~ 21149309 (+)
col11a1a col11a1 coding downstream 629566 22215859 ~ 22304517 (+)
olfm3a olfm3 coding downstream 739796 22326089 ~ 22356408 (+)
LOC118937330 NA coding downstream 759700 22345993 ~ 22349256 (+)
LOC110535481 LOC105022597 coding downstream 806102 22392395 ~ 22405735 (+)
LOC110535485 LOC106578486 coding downstream 955306 22541599 ~ 22554183 (+)
G954710 NA non-coding upstream 6573 21577604 ~ 21577865 (+)
G954709 NA non-coding upstream 6897 21577135 ~ 21577541 (+)
G954212 NA non-coding upstream 31501 21544901 ~ 21552937 (+)
G954194 NA non-coding upstream 83123 21499391 ~ 21501315 (+)
G953836 sh3glb1 non-coding upstream 188529 21376105 ~ 21395909 (+)
G954719 NA non-coding downstream 5172 21591465 ~ 21658572 (+)
G954728 NA non-coding downstream 27365 21613658 ~ 21614430 (+)
G954721 NA non-coding downstream 32046 21618339 ~ 21625928 (+)
G955227 NA non-coding downstream 532737 22119030 ~ 22119341 (+)
G955230 NA non-coding downstream 537067 22123360 ~ 22123572 (+)
phldb2b tcpe other upstream 1815085 19740565 ~ 19799150 (+)
G951511 NA other upstream 2457353 19126665 ~ 19127085 (+)
G948710 NA other upstream 4982546 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 5039149 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 5249146 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 1140260 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 2078995 23665288 ~ 23665930 (+)
G956797 NA other downstream 2189479 23775772 ~ 23776845 (+)
G957942 NA other downstream 3014178 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 3208307 24794600 ~ 24795736 (+)

Expression


Co-expression Network