XLOC_028663


Basic Information

Item Value
gene id XLOC_028663
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15757435 ~ 15760591 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055579
AGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGTTATTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCACACTTGACAAATGCACCCAAAACTAATGGACCTGGCCTCATCCAGGGGAGGAGCTAAAGGGGAAATAATCGGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTGTGAGtattacaatgttttaaaattaaaattaaaattaaatcttcCCTTGACAGTGGAAACATACAAGACAAAATATATGCTCAATGACTGCTCTCTTTTAGTTTAATGTGTAGGTATATTACATTGTCCACACACACTGGGTTTACCTAGGTCTGTGTTATAATAACAATGTACTATTTAGTTCAATAAACAGATGTTGACAATAATGAGAAAGATTTGTAAAATGGGCATGACTGTTGCGTTTCACTTTTCCATTTAAATTACATTGTGAAACGAATTATTCTTATGATTGAGTGGCTGGGTGCATGACCATGTAAggggtaaaataaaacaaagtttccAGAGATTAACTGAAATCaaatgtaagtaaaataaaaaactgaagtaattataaatgtaattatctCTATCATGCTAATCTATTTTTTTATCTTGCTTTACAAGAATACACAAGAATCATTGATCATGCTAATCTATTTTTTTATCTTGCTTTACAAGAATACACAAGAATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTAACGGGCATAATATATGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCGTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGCATTTAcatatgtttgtttaaaataatacaaatgttaCATGTTTTACAATTAAGGTTAGCTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGTTGGAATTCATTGTGATGGCATAGCTATGCATGCATGCACATTTTTGAAGGCAAAGCTGACGGGTCAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaataaaacattgaaaactgtgtttctaaataaataaaaagttactgAAACTAAAA
>TCONS_00055578
AGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTGTATAGAAGAGGTTgttaaagagttaaattttatatCTTGATCAGCATCTGGACCCATCATCAAAGTTATTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCACACTTGACAAATGCACCCAAAACTAATGGACCTGGCCTCATCCAGGGGAGGAGCTAAAGGGGAAATAATCGGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTAATACACAAGAATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTAACGGGCATAATATATGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCGTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGCATTTAcatatgtttgtttaaaataatacaaatgttaCATGTTTTACAATTAAGGTTAGCTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGTTGGAATTCATTGTGATGGCATAGCTATGCATGCATGCACATTTTTGAAGGCAAAGCTGACGGGTCAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaataaaacattgaaaactgtgtttctaaataaataaaaagttactgAAACTAAAA
>TCONS_00058150
TGATAACTCAATTTTTCCACACCAATGGAGTTCTGGATTTCAAAGCTCCTCCCTCACTGAACGATCAAGAGGCATGTCCGGACAAGTTTTAAGCAGACCATTTGGCACAAAGGATACTTTAAGGTGAGATATCTGGGTTTTATATCATTTCCAAATCAATATTCTACATTCCATTAGTGTTGGCTACTCCTGGTAAATTATAGTTGATGTTGGCAGTGTTTTTTGACTAGAAAATAGTAGATAAGAAAGTAAAAACACATACGGTAAGCCAGAAAGGCAATTTAGTATATATGTCAAAATAACAAAGTTTATATAGTAGATGCTTTTTTCATATATAGTATTGCtttatcctgcatgttttatgttAGTTACCCTAGCAGAAATATATATTCTGGAGCTTGCTCACAGTTGTTATCCAAcctgaaatttgtattttattcctCCTGTTCTTAtggaaaatattacatttatctaCTGATTGCTAAGATTTTCATACAAAGTTCATGCAACTGTATTACAACTTTCTAGGCTGATCTGTATTTTAGATATAAGTAGGCTTTTATATAAAACAGGTTGGGGGTGCAAAATGTGTAAATTTGAAACATCAACATAAATAGTTTTGCTAAAACATTACAGACTACACCATGGTAATTGTGGGCAACCATTTCCATGCCTCTGTCaagattgtttgtgttttttcagaACATGGGGCAGCCTTAGATCACATTTATCAAGACATCAAACTTAGAAAACCTCCAGATTTGcagaaagtttttattttacttgtcctTGTTGCAATGCCATGACAATTTccatagaaattaaaaaaaaaaacacgaaactGTCATCTGTGTATTTCAGAACTGCAATTTCAGAACTAACATGTATGGTACATTTGCTTCCCACAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTATGTATGTTCATTCAATGCAGATCAACACAGTGATGTGGATGGTCAAAGTGGGGAGCTGTCTGATGAAGGTCAAGATGACAATAATGATGTGACAGACCTGCCaaactgcatagaaaaaaaaTGGCTTTGTTGTGTCTAAAACTGGAGagcactttaaatgcatcttACAGGTGTATAGAAGAGGTTgttaaagagttaaattttatatCTTGATCAGCATCTGGACCCATCATCAAAGGTATTTTACAGGCCTGCTTGGGTTGTAAAGCCCATCTTACAGTCCACAAATCTGTCTAATGTAAAACTTTTGCATgaagtaacaaaaataaacaattttcaaGTTATTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGgtaagtttagttttatttttagtctAGTTTCACAATTTTGCAAGAAAATCATCTTCAAGTTATTTATGCTAAAAACTTCTTACAACAATAACATATTACATGTTATTTGTTGTGTTACACATTGTATacaattattccattatttaattattctattTTTTCTACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCACACTTGACAAATGCACCCAAAACTAATGGACCTGGCCTCATCCAGGGGAGGAGCTAAAGGGGAAATAATCGGAAGGATTAAGGATATGCTTCTTGAGgtattgtaaataatttgtacACACTAGAATAGTTTAGATTTGTGTTAAATTGTCAGGTTGCCATCAGTTGTTTGTTCAGATAAAACTATATTCATTTACTGTAGGTACTTTATcttgatatatatttttctaattaaaCAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTGTGAGtattacaatgttttaaaattaaaattaaaattaaatcttcCCTTGACAGTGGAAACATACAAGACAAAATATATGCTCAATGACTGCTCTCTTTTAGTTTAATGTGTAGGTATATTACATTGTCCACACACACTGGGTTTACCTAGGTCTGTGTTATAATAACAATGTACTATTTAGTTCAATAAACAGATGTTGACAATAATGAGAAAGATTTGTAAAATGGGCATGACTGTTGCGTTTCACTTTTCCATTTAAATTACATTGTGAAACGAATTATTCTTATGATTGAGTGGCTGGGTGCATGACCATGTAAggggtaaaataaaacaaagtttccAGAGATTAACTGAAATCaaatgtaagtaaaataaaaaactgaagtaattataaatgtaattatctCTATCATGCTAATCTATTTTTTTATCTTGCTTTACAAGAATACACAAGAATCATTGATCATGCTAATCTATTTTTTTATCTTGCTTTACAAGAATACACAAGAATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTAACGGGCATAATATATGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCGTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGCATTTAcatatgtttgtttaaaataatacaaatgttaCATGTTTTACAATTAAGGTTAGCTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGTTGGAATTCATTGTGATGGCATAGCTATGCATGCATGCACATTTTTGAAGGCAAAGCTGACGGGTCAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaataaaacattgaaaactgtgtttctaaataaataaaaagttactgAAACTAAAA
>TCONS_00057343
AAAAAATTGCGTTGATAACTCAATTTTTCCACACCAATGGAGTTCTGGATTTCAAAGCTCCTCCCTCACTGAACGATCAAGAGGCATGTCCGGACAAGTTTTAAGCAGACCATTTGGCACAAAGGATACTTTAAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTGTATAGAAGAGGTTgttaaagagttaaattttatatCTTGATCAGCATCTGGACCCATCATCAAAGTTATTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCACACTTGACAAATGCACCCAAAACTAATGGACCTGGCCTCATCCAGGGGAGGAGCTAAAGGGGAAATAATCGGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTAATACACAAGAATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTAACGGGCATAATATATGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCGTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGCATTTAcatatgtttgtttaaaataatacaaatgttaCATGTTTTACAATTAAGGTTAGCTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGTTGGAATTCATTGTGATGGCATAGCTATGCATGCATGCACATTTTTGAAGGCAAAGCTGACGGGTCAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaat

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0030154 cell differentiation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0035295 tube development biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0009888 tissue development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048863 stem cell differentiation biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0060485 mesenchyme development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0120114 Sm-like protein family complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094584

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055579 False 1587 lncRNA 0.33 4 15757435 15759673
TCONS_00055578 False 1156 processed_transcript 0.35 6 15757435 15759673
TCONS_00058150 False 3145 lncRNA 0.33 1 15757435 15760579
TCONS_00057343 True 1237 lncRNA 0.37 7 15757487 15760591

Neighbor

gene id symbol gene type direction distance location
XLOC_028662 chchd3a coding downstream 153847 15490215 ~ 15603588 (-)
XLOC_028661 NA coding downstream 285241 15469287 ~ 15472194 (-)
XLOC_028660 NA coding downstream 302770 15444352 ~ 15454665 (-)
XLOC_028659 plxna4 coding downstream 336983 15217929 ~ 15420452 (-)
XLOC_028658 NA coding downstream 551032 15201109 ~ 15206403 (-)
XLOC_028664 NA coding upstream 152574 15913165 ~ 15974147 (-)
XLOC_028665 mest coding upstream 235643 15996234 ~ 16001215 (-)
XLOC_028666 NA coding upstream 243309 16003900 ~ 16025255 (-)
XLOC_028667 NA coding upstream 273706 16034297 ~ 16037857 (-)
XLOC_028668 NA coding upstream 279523 16040114 ~ 16042181 (-)
XLOC_028657 AL590150.2 non-coding downstream 617211 15135239 ~ 15140224 (-)
XLOC_028655 BX571796.1 non-coding downstream 750735 15006216 ~ 15006700 (-)
XLOC_028669 NA non-coding upstream 280964 16041555 ~ 16075501 (-)

Expression


Co-expression Network