XLOC_028664


Basic Information

Item Value
gene id XLOC_028664
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15913165 ~ 15974147 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058151
ATTCAGTGCAGTGGCCCTCGGACAtgggttcaagacagagttcagctGCCGAGTCGACATTCACTGCAGGACTGGGTTCAGGCATCTGTCCTTCTTCAAGATCAGACTCTTCTTCAATCAAGTCTGTATCAGGAAAACAAACAAGTGAAACTTAATGGACTTACTGCTATTCCTGGAGACCCGATCGGCCCATTTTCCCCCTGTGCACCCTGTCAAGCAAATGTATTGTTGAATAGGGTCCAGTATTACCAGGAGGCCCCTGAGATTGTGGAAAAAGCAAGACAGGAGAGAAAAGGGCTTCGCTGCAAATGCTACCGATGAACTCTCTCTCGATGGATGGGAGGTCGTCAAAATCACTGGCGTAGAAGATGTTCTTGTATGTGGTGGGAGACGCGATTGTCCTCACCTCCTCCATGTCGGCGTGAGCGATGCCGATGACCAACACACTGACCCCTAACAGACAAGTAGCAGAAACTGATGTTTAGCATTCACTTCTGCTTATACTGAAGTCTACGCTGATGGagtaCGTGCGCTATCCTGGATGGCGGCTCCACATCATCCTGTGCTCTTCCATCCGTCAACAGCACCAACACATGAGGAGCTTCCTGTCTCATTCCCAAAGACTCCTGAAACATCTCCCTGAGGACATAACTGATCCCAcgacctacacacacacatccacaatcaGCACATTTCAGACATGATCGCTAACTATTTTGAATGTAACCTCTGAATGTAAGAATTAACCTGTTTTTGTGTTTCCTCCTCCATAGCGGACTTCTCGGAGAGCTCTTAAGACGGAGTTACGGTCTTTATGAGTGTTGAAGTTGAACTCGATCCTGGGTTGATCACTGTAGTGAACTACTGCTATCTAAGATTCTTTTGGTGATGGTTGTGACCGGACCCTCCACTTCCCCATAAAGTGGCCTGATGGAAAAGATGTAGGTTCTGCCATACTGGAGATCTCGGATCTTATACGAGATATGTGTCTCCAGGACAGCAGGTATCCCGAGACTCCAGTCACACTCGTCCAGTTTAATACAGTGCTGTTGTCTGTGGTGTTCAGAGCACTGAATCCAGTCACCTTGGGCAGATCCACTGGAACAAAACACCACACAAAGCTGGATCTTGTAGGCAGAACCGGCTGGCAGATCAGTGATGGTGAAGGAAGTGGCAGAAGAAGACACGGCCTCACTCTTCTTCTCTCCACCTGAGTAAAAACGAACAGATGGATGATGGATTGAAGAGTGACTATAATGCAGTGTAATGTGGATGGCCGGTGCCTACCGTGGAAGGGGCTCCAGGTGATTTTGTAGCCAGTGACGCCTGGTGTTTTCTTCCATGCCAGTTTGAAAGAGCTGACGCCAGTGTCCACAACCTTCACCTCGCGAACTGTCTCGATCAGCTCGGAGTCGGTCAAAGAGGCTGGGAAATTGATACGGATAGTGACACAGAGTACAAGGAAATTCATTCAAATATGTGTATAATTTAAGtttgattctttttttatttaacaaaatttcAATTTACTATTAAAATAAGTCAAATCTATTCAATTATCCATCATTGCATTTTTGATGACTTTAagtttttttatacagtatacacacagaAAGAGAACAAACATCGGCTCGTACTGTAGACATTCAAAAGACAATATAAAAGAACTCAAAA
>TCONS_00058152
CATTTATTAGCCAttgtgttttgctgtgaaaatattgtacacaaaaatattgtataatgtttctattttatttttatctcaaGAACAATTGAACTCATAAatcattattactgttattttatttgtgaTCAAATAAATCCAGACGTGATGAGACTCTCCCCTTGACTGGTGTGTTTAGTCATATATGAATGTTACTGTCTCTCACCCAAAGCGTGCGCTATCCTGGATGGCGGCTCCACATCATCCTGTGCTCTTCCATCCGTCAACAGCACCAACACATGAGGAGCTTCCTGTCTCATTCCCAAAGACTCCTGAAACATCTCCCTGAGGACATAACTGATCCCAcgacctacacacacacatccacaatcaGCACATTTCAGACATGATCGCTAACTATTTTGAATGTAACCTCTGAATGTAAGAATTAACCTGTTTTTGTGTTTCCTCCTCCATAGCGGACTTCTCGGAGAGCTCTTAAGACGGAGTTACGGTCTTTATGAGTGTTGAAGTTGAACTCGATCCTGGGTTGATCACTGTAGTGAACTACTGCTATCTAAGATTCTTTTGGTGATGGTTGTGACCGGACCCTCCACTTCCCCATAAAGTGGCCTGATGGAAAAGATGTAGGTTCTGCCATACTGGAGATCTCGGATCTTATACGAGGTGAAGCCAGAGCTCAGCAGATCAGTGGACACGTCCACCTctacagaaaacaacaacaacaaagacaaTCATATCAGGACTGAATAATGGCTCCAATGGTGCCAGCTGAAGAAAACTAAATGTGGGAGAGACTATTGTCTGCACAATGACAAAATAAATGACTCTTCAATATTAGTTTAAAACCCTTAAAGGGCACCATGACTTCAGAATCTGAAAATTTTACTGACAGTCTTATAAGCATcaaaagctaaataataaaaatccacCTTTAAAACCCTCATAACCTTCATGTTCGGGCAAAGGACGTCCTCAGTATAAGGCCCTGCTGACGTCATTATAACTGGCATGAATCACAGATCTTTCATGACATTATCTCCGCTGTctattctgttctttttttttatgtctgcatATCAGACAAAACGCCTTTTGTGAGAGGAACTGTTATTACAGTTCTTATCTGAAATTAGTTTTGCCCCACCATTTAGCAACactaattaacaaataaatggtCATCCTCTTTGTTCTATACAATCTGAGCAGTATTAGAGTGAAGATCCAGTAAATGTAATATACAGAAAATAGAATTAGTTTTTACTTTGTTATTATTTTCAAACTTAATTCACCTGAATATCCAATGTGCATGTGCCAATGTTAACTGTCggctattaatattattgtattaataatgtttatatctataCTAGAAATACACATTTGGTAGAAACACAGATTTTGAGAACa
>TCONS_00058153
ATTTCTTCCAATGACTAATTGTTTCACTACATAAGACATCAATGTATCATCAGGCACCACATGTATTACTTTCCTTTTGACTATATATGCTTTTATTTAACTCTCAACGTATCGATAACTGCTGACCAACATGGTACTGTATGATGGTTTAAGCTTGAAAAGCTCTCTAATGTTCTACTAACAAAAGTGTTTCATAATGGATGACTATCTTTGGTTACTAACTCTATAAATACCACTAGTAATCCTACCCTTTCAGAGGAGCTGTTGATTTGGAGAAACTTTAAAGATGTAACATCACTGAAGTTGGTTTCTACTAGTTTCTTTTCTTCTACATCTACCAGCATGTCCTTGGTTTTACTCAGATCATCATTTTTGCGAACAGTAGAGATAGTCCAAACAGTAGGAAGCACTTCTGGTTCACCCACAGTCTCCTTAAGACAATACAAACATTCTATCAGTACAAAATGTGtcaaatatatttaagaaaaaagtatttaagtgatgttatgtttaatgttaatgtttgctTACAGGACTGGGTTCAGGCATCTGTCCTTCTTCAAGATCAGACTCTTCTTCAATCAAGTCTGTATCAGGAAAACAAACAAGTGAAACTTAATGGACTTACTGCTATTCCTGGAGACCCGATCGGCCCATTTTCCCCCTGTGCACCCTGTCAAGCAAATGTATTGTTGAATAGGGTAAGTAGTTTATTTGGTAATGAACAAACGTTACGAATGATGAATCAGAATAGAGTACTCCAAGgaaaatattttcataaaaaattattttatttgatgcttTAAAAAGTTAGTATTTCAAAGAGTAAACAGAGTTATGACCACAAgactaaactgaaaaaactaTTTACCatatatttgattaatatttgttgttttattttaattgaaagcAACAGTCGGgttccagagaaaaaaaaaaaaaaactcattcattttctccgTAGGGGAACTGATAGTTCACAGCAGGTCTGTCTTTTTAAACTAATTACAGTATATATTCTTTAGTTGAACCTttatttagtaacactttattttaatggtccattcgagttttagtagactgtctgcttaatatctgttgatactgctccttcaacagacatttaactgactacaagTGCAAAggatgtcaacttacactaaccctaatcctATTCCCAACATAACTGTCTACTTCTAATCTTATAAGcattgacatgtagatgcaatgtaatttaaattcaacaaacgaaccatcacAATAAAGTGTGCCCCTTTATTTTTATAGAAAAGGCACATTTGTCATGTTCCTTAGTAAAATACCTTCTCTCCTTGATCTCCTTTAAGACCCTTTTTCCCCTAAACAGAGACAAAAACACGAAACGGTGAAAAACCTCTGCCATTATGCAACACTTTTTCAACCAAATCTGTGAAAATATTCACactgatttacttttaaagtgacattatttAACACTATGAATTGACTTTAAATGTGAAATGGTTGTGTAAAGTCTGACAAACCCGAGGGCCTGCGATCCCTTGGAGTCCTTGGATTCCTACTTCACCCTTGGGATGAATACAATACAGATTACACATTCCACAAGAAAGTCATTTAATTCCATTGATTTTAAATACTTGCTTACCTTTGAGCCTGAGAGTCCAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058151 False 1674 lncRNA 0.45 9 15913165 15974147
TCONS_00058152 False 1410 lncRNA 0.38 2 15915485 15919626
TCONS_00058153 True 1670 lncRNA 0.34 2 15928235 15942960

Neighbor

gene id symbol gene type direction distance location
XLOC_028663 NA coding downstream 152574 15757435 ~ 15760591 (-)
XLOC_028662 chchd3a coding downstream 309577 15490215 ~ 15603588 (-)
XLOC_028661 NA coding downstream 440971 15469287 ~ 15472194 (-)
XLOC_028660 NA coding downstream 458500 15444352 ~ 15454665 (-)
XLOC_028659 plxna4 coding downstream 492713 15217929 ~ 15420452 (-)
XLOC_028665 mest coding upstream 22087 15996234 ~ 16001215 (-)
XLOC_028666 NA coding upstream 29753 16003900 ~ 16025255 (-)
XLOC_028667 NA coding upstream 60150 16034297 ~ 16037857 (-)
XLOC_028668 NA coding upstream 65967 16040114 ~ 16042181 (-)
XLOC_028669 NA coding upstream 67408 16041555 ~ 16075501 (-)
XLOC_028658 NA non-coding downstream 706762 15201109 ~ 15206403 (-)
XLOC_028657 AL590150.2 non-coding downstream 772941 15135239 ~ 15140224 (-)
XLOC_028671 NA non-coding upstream 153526 16127673 ~ 16192183 (-)

Expression


Co-expression Network