G955239


Basic Information

Item Value
gene id G955239
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22135522 ~ 22135757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1089157
ttccttaataggatgtcggtgggtggagccgggagggtcgtcagcgaaaTGGGGCATACCTGGGCTCGGGTGTGTCGCAGGATAAACgcacctcttccccattcattgaggagactctctccatgcagacactgatagattttggttgtggcatttttgtggctgtttttgtttgtttacgttgacacctttcaacacccctcattcacactcacttacactactgattactgaat

Function

NR:

description
tetratricopeptide repeat protein 7B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1089157 True 236 lncRNA 0.48 1 22135522 22135757

Neighbor

gene id symbol gene type direction distance location
LOC110536585 vav3 coding upstream 584650 21423424 ~ 21550872 (+)
nrros LOC106578474 coding upstream 778446 21351702 ~ 21357076 (+)
fbxo45 LOC106578473 coding upstream 787650 21345476 ~ 21347872 (+)
LOC110535467 arhg4 coding upstream 809784 21247823 ~ 21325738 (+)
LOC110535465 LOC106578468 coding upstream 986213 21131483 ~ 21149309 (+)
col11a1a col11a1 coding downstream 80102 22215859 ~ 22304517 (+)
olfm3a olfm3 coding downstream 190332 22326089 ~ 22356408 (+)
LOC118937330 NA coding downstream 210236 22345993 ~ 22349256 (+)
LOC110535481 LOC105022597 coding downstream 256638 22392395 ~ 22405735 (+)
LOC110535485 LOC106578486 coding downstream 405842 22541599 ~ 22554183 (+)
G955235 NA non-coding upstream 4097 22131138 ~ 22131425 (+)
G955231 NA non-coding upstream 10943 22123826 ~ 22124579 (+)
G955230 NA non-coding upstream 11950 22123360 ~ 22123572 (+)
G955227 NA non-coding upstream 16181 22119030 ~ 22119341 (+)
G954721 NA non-coding upstream 509594 21618339 ~ 21625928 (+)
G955329 NA non-coding downstream 76159 22211916 ~ 22212144 (+)
G955349 NA non-coding downstream 112387 22248144 ~ 22249314 (+)
G955462 NA non-coding downstream 224444 22360201 ~ 22360521 (+)
G955463 NA non-coding downstream 225919 22361676 ~ 22361893 (+)
G955481 NA non-coding downstream 258972 22394729 ~ 22454322 (+)
phldb2b tcpe other upstream 2366169 19740565 ~ 19799150 (+)
G951511 NA other upstream 3008437 19126665 ~ 19127085 (+)
G948710 NA other upstream 5533630 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 5590233 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 5800230 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 590796 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 1529531 23665288 ~ 23665930 (+)
G956797 NA other downstream 1640015 23775772 ~ 23776845 (+)
G957942 NA other downstream 2464714 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 2658843 24794600 ~ 24795736 (+)

Expression


Co-expression Network