G955349


Basic Information

Item Value
gene id G955349
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22248144 ~ 22249314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1089285
CTTATGTACTCTGCATTGATAATCAAATCCCTGGTACACTCATGTACTCCGCATTGACCATCAAATCCCTGGTACACATATGTACTCTGCATTGACCATCAAATCCCTGGTACACATATGTACTCTGCATTGAACATCAAATCCCTGGTACACATATGTACTCTGCATTTTTGCACATTGCTATATTGTAGATTGACCATTTATGAAATATGCTTGTAGTGTCATTTCAGATTTACTTAATCTATTTCAGTCTTTTTTCACCATTGTACATATATTGATATGCCGATGGTATGTATTATGTTTGTGCAAAAAAGACTGAAATAACCTAAAGGCTGAAATAACCTAAAGACTGAAATAACCTAAAGACTGAAACAACCTAAAGACTGAAACAACCTAAAGACTGAAATAACCTAGACTGAAATAACCTAAAGACCGAAATAACCTAAAGACTGAAATAACCTAAAGACTAAAACAACCTAAAGAGCGAAATAACCTAAAGACTGAAATAACCTAAAGACTGAAACAACCTAAAGACTGAAATAACCTAAAGACTGAAGCAACCTAAAGACTGAAATAACCTAGACTGAAATAACCTAAAGACCGAAATAACCTAAAGACTGAAATAACCTAAAGACTAAAACAACCTAAAGAGCGAAATAACCTAAAGACTGAAATAACCTAAAGACTGAAACAACCTAAAGACTGAAATAACCTAAAGACTGAAAGAACCTAAAGTCTGTCTTAGACCTGACTGATTGATGTAAATTCGATCATCTAAATTGATAATGCTTTTTTTTAAGTCATcaaggtaacactttatttgtcCCTTTTTGTTTTAGGCCTGAAGTCAATACTGGACGATGATAATATCTGTTGCAAGACACACGTACAGTGCATCAACATTACGGAGTAACAGACACCAGTTTGTTTCACTGTGAGAGACTAGTCCTCAACGTAATGACTTTGTGGCTAGACAATAATTGCACACTATCATAAAGTTAAATCAATATCTCACCAacaaaacatatacagtgccttgcgaaagtattcggccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1089285 True 1057 lncRNA 0.35 2 22248144 22249314

Neighbor

gene id symbol gene type direction distance location
LOC110536585 vav3 coding upstream 697272 21423424 ~ 21550872 (+)
nrros LOC106578474 coding upstream 891068 21351702 ~ 21357076 (+)
fbxo45 LOC106578473 coding upstream 900272 21345476 ~ 21347872 (+)
LOC110535467 arhg4 coding upstream 922406 21247823 ~ 21325738 (+)
LOC110535465 LOC106578468 coding upstream 1098835 21131483 ~ 21149309 (+)
olfm3a olfm3 coding downstream 76775 22326089 ~ 22356408 (+)
LOC118937330 NA coding downstream 96679 22345993 ~ 22349256 (+)
LOC110535481 LOC105022597 coding downstream 143081 22392395 ~ 22405735 (+)
LOC110535485 LOC106578486 coding downstream 292285 22541599 ~ 22554183 (+)
LOC110535486 LOC106578488 coding downstream 307795 22557109 ~ 22564107 (+)
G955329 NA non-coding upstream 36000 22211916 ~ 22212144 (+)
G955239 NA non-coding upstream 112387 22135522 ~ 22135757 (+)
G955235 NA non-coding upstream 116719 22131138 ~ 22131425 (+)
G955231 NA non-coding upstream 123565 22123826 ~ 22124579 (+)
G955230 NA non-coding upstream 124572 22123360 ~ 22123572 (+)
G955462 NA non-coding downstream 110887 22360201 ~ 22360521 (+)
G955463 NA non-coding downstream 112362 22361676 ~ 22361893 (+)
G955481 NA non-coding downstream 145415 22394729 ~ 22454322 (+)
G955488 NA non-coding downstream 157349 22406663 ~ 22407684 (+)
G955490 LOC108412106 non-coding downstream 159000 22408314 ~ 22413868 (+)
phldb2b tcpe other upstream 2478791 19740565 ~ 19799150 (+)
G951511 NA other upstream 3121059 19126665 ~ 19127085 (+)
G948710 NA other upstream 5646252 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 5702855 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 5912852 16327393 ~ 16338373 (+)
tlcd4a LOC106570700 other downstream 477239 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 1415974 23665288 ~ 23665930 (+)
G956797 NA other downstream 1526458 23775772 ~ 23776845 (+)
G957942 NA other downstream 2351157 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 2545286 24794600 ~ 24795736 (+)

Expression


Co-expression Network