G955488


Basic Information

Item Value
gene id G955488
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22406663 ~ 22407684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1089443
TAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTATTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTATTGTCACCAACTAGTCAACCTTCTCCACTATCCTCCACGTTCCTCTAGGAGCGTTCAATTCCCCAGACAACTATTCCTGTCTGagtttctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgcgtgcatttgtgtgggtgtgtgaaagTGTTTACGCACAAACGcgcccgtgtgtgtgtctgtgcgtgtgggGAGGGACGGTTCATTTCCCCAGACAACTTAGGGGTGTGACCTTGATTTCTTTTCTCCGTGCCCCAGCGGCCCTCGGGTGCAGCACCATTCCGTCGTCCTCTCCTGACTGCTGCTTGGCAAAGTTCACAAACacctggtgaga
>TU1089444
TAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTATTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTATTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCAACCTTCTCCACTATCCTCCACGTTCCTCTAGGAGCGTTCAATTCCCCAGACAACTATTCCTGTCTGagtttctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgcgtgcatttgtgtgggtgtgtgaaagTGTTTACGCACAAACGcgcccgtgtgtgtgtctgtgcgtgtgggGAGGGACGGTTCATTTCCCCAGACAACTTAGGGGTGTGACCTTGATTTCTTTTCTCCGTGCCCCAGCGGCCCTCGGGTGCAGCACCATTCCGTCGTCCTCTCCTGACTGCTGCTTGGCAAAGTTCACAAACacctggtgaga
>TU1089446
TAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTATTGTCACCAACTAGTCTCTCACCAGTCACCCGTATTGTCACCAACTAGTCTCTCACCAGTCACCCGTATTGTCACCAACTAGTCAACCTTCTCCACTATCCTCCACGTTCCTCTAGGAGCGTTCAATTCCCCAGACAACTATTCCTGTCTGagtttctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgcgtgcatttgtgtgggtgtgtgaaagTGTTTACGCACAAACGcgcccgtgtgtgtgtctgtgcgtgtgggGAGGGACGGTTCATTTCCCCAGACAACTTAGGGGTGTGACCTTGATTTCTTTTCTCCGTGCCCCAGCGGCCCTCGGGTGCAGCACCATTCCGTCGTCCTCTCCTGACTGCTGCTTGGCAAAGTTCACAAACacctggtgaga
>TU1089448
TAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCCGTATTGTCACCAACTAGTCTCTCACCAGTCACCCGTATTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGTAGTGTCACCAACTAGTCTCTCACCAGTCACCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1089443 False 682 lncRNA 0.52 3 22406663 22407684
TU1089444 False 716 lncRNA 0.52 3 22406663 22407684
TU1089446 False 716 lncRNA 0.52 4 22406663 22407684
TU1089448 True 477 lncRNA 0.50 2 22406663 22407173

Neighbor

gene id symbol gene type direction distance location
LOC110535481 LOC105022597 coding upstream 928 22392395 ~ 22405735 (+)
olfm3a olfm3 coding upstream 50255 22326089 ~ 22356408 (+)
LOC118937330 NA coding upstream 57407 22345993 ~ 22349256 (+)
col11a1a col11a1 coding upstream 102146 22215859 ~ 22304517 (+)
LOC110536585 vav3 coding upstream 855791 21423424 ~ 21550872 (+)
LOC110535485 LOC106578486 coding downstream 133915 22541599 ~ 22554183 (+)
LOC110535486 LOC106578488 coding downstream 149425 22557109 ~ 22564107 (+)
tlcd4a LOC106570700 coding downstream 304893 22712577 ~ 22741263 (+)
LOC110535493 LOC106578494 coding downstream 343039 22750723 ~ 22756977 (+)
ptbp2a ptbp2 coding downstream 543477 22951161 ~ 22966803 (+)
G955463 NA non-coding upstream 44770 22361676 ~ 22361893 (+)
G955462 NA non-coding upstream 46142 22360201 ~ 22360521 (+)
G955349 NA non-coding upstream 157349 22248144 ~ 22249314 (+)
G955329 NA non-coding upstream 194519 22211916 ~ 22212144 (+)
G955239 NA non-coding upstream 270906 22135522 ~ 22135757 (+)
G955490 LOC108412106 non-coding downstream 630 22408314 ~ 22413868 (+)
G955498 LOC104966354 non-coding downstream 13129 22420813 ~ 22423206 (+)
G955501 LOC108235267 non-coding downstream 17247 22424931 ~ 22426285 (+)
G955531 NA non-coding downstream 70767 22478451 ~ 22481603 (+)
G955585 NA non-coding downstream 152782 22560466 ~ 22561104 (+)
phldb2b tcpe other upstream 2637310 19740565 ~ 19799150 (+)
G951511 NA other upstream 3279578 19126665 ~ 19127085 (+)
G948710 NA other upstream 5804771 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 5861374 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 6071371 16327393 ~ 16338373 (+)
G956728 LOC106613263 other downstream 1257604 23665288 ~ 23665930 (+)
G956797 NA other downstream 1368088 23775772 ~ 23776845 (+)
G957942 NA other downstream 2192787 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 2386916 24794600 ~ 24795736 (+)

Expression


Co-expression Network