Gene
RNA
| Item | Value |
|---|---|
| gene id | G956126 |
| gene name | LOC106578486 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 22549254 ~ 22549665 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| ATP-binding cassette sub-family D member 3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1090146 | True | 258 | lncRNA | 0.55 | 2 | 22549254 | 22549665 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| arhgap29a | LOC106578485 | coding | downstream | 20989 | 22460588 ~ 22528265 (-) |
| abca4a | LOC107729654 | coding | downstream | 88753 | 22405796 ~ 22460501 (-) |
| rnpc3 | rnpc3 | coding | downstream | 366847 | 22167163 ~ 22182407 (-) |
| LOC110535477 | LOC106578483 | coding | downstream | 387257 | 22142838 ~ 22161997 (-) |
| prmt6 | prmt6 | coding | downstream | 693551 | 21854322 ~ 21855703 (-) |
| f3a | LOC106578489 | coding | upstream | 14377 | 22564042 ~ 22573727 (-) |
| LOC110535489 | LOC106578489 | coding | upstream | 72942 | 22622607 ~ 22628858 (-) |
| LOC110535490 | LOC106578491 | coding | upstream | 120301 | 22669966 ~ 22685796 (-) |
| LOC110535495 | LOC106578501 | coding | upstream | 479161 | 23028826 ~ 23246227 (-) |
| LOC118937332 | NA | coding | upstream | 723171 | 23272776 ~ 23277046 (-) |
| G956117 | NA | non-coding | downstream | 8605 | 22540204 ~ 22540649 (-) |
| G956056 | NA | non-coding | downstream | 94915 | 22394734 ~ 22454339 (-) |
| G956055 | NA | non-coding | downstream | 138041 | 22394158 ~ 22411213 (-) |
| G956051 | NA | non-coding | downstream | 158471 | 22390500 ~ 22390783 (-) |
| G956321 | ptbp2 | non-coding | upstream | 414196 | 22963861 ~ 22964602 (-) |
| G956430 | NA | non-coding | upstream | 637604 | 23187269 ~ 23187632 (-) |
| G956466 | NA | non-coding | upstream | 698279 | 23247944 ~ 23248190 (-) |
| G956477 | NA | non-coding | upstream | 704535 | 23254200 ~ 23254421 (-) |
| G956495 | NA | non-coding | upstream | 721999 | 23271664 ~ 23271918 (-) |
| G954919 | NA | other | downstream | 969426 | 21579583 ~ 21579828 (-) |
| G954484 | arhgef4 | other | downstream | 1295945 | 21246014 ~ 21253309 (-) |
| G954441 | NA | other | downstream | 1470596 | 21077650 ~ 21078658 (-) |
| G952255 | LOC106578453 | other | downstream | 3134518 | 19401554 ~ 19414736 (-) |
| dap | dap | other | downstream | 3685479 | 18849188 ~ 18863855 (-) |
| G956234 | LOC106578494 | other | upstream | 203615 | 22753280 ~ 22756973 (-) |
| G956366 | NA | other | upstream | 457485 | 23007150 ~ 23043985 (-) |
| G957170 | NA | other | upstream | 1174314 | 23723979 ~ 23724418 (-) |
| G957157 | LOC106578515 | other | upstream | 1196815 | 23746480 ~ 23748084 (-) |
| G957684 | NA | other | upstream | 1693057 | 24242722 ~ 24243309 (-) |
