G955919


Basic Information

Item Value
gene id G955919
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23179974 ~ 23184228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1089908
tttaaggagagaggagagctgccacatgatagagatgtatagtaGTCACAGCAGATGTGgcaggcagcgagagagagaagagaagggagcgGACGGAAGGCTTTTGTAATTGTGCCTTTTATCCTTTAAGAAGTAATGAAACTTTAACGTGAGCTTCTCTTGCTTTCTGAGATGTGTCACTAGATTAGTCTCGATAGGAAGAGAAGGCAGGAGGAGGAAAGGCGTGCGAGATGGCTAGAAATGAACTGTTTTGTTGTGCTGTTGTACTCCGTTCCTGTAGCTAAAGAACAGGATCTAAAACACACGGCATATACAGTACCGGAGAGGATGATAAACGCACTGATTAAAGAATCCAACCCCCTGGCAAAGCCCGCGTGCCAACCTTCCTCTCGTTGTGCGTGTTTGTCTCATTGTTCTAAAGCAATAGAGGGAAATTAACAGACTAACATGCAAAGATAATCATCCACGTCACAATAGATTGAAGGTGTATACAGGCACCCGTTTTGTCATCTTGACTTCCTCTCATACAAAGTGATCTCGTTATGCCGTTCTTCATTCAGTAGCTCTGTGTTGTCTATGCATGTACTCTACCTTTAACTACGGAATAGTACAATTTAATTGGGCTGAGCACACCTACAGTACAGTTGGTTACAGTTACATAACGGCAACGTAGGTAAAGTGACATGCTCACAATTATGTGCCTTTCATATACCTGCAGAACCATTCATTCAATTTGTAAAAGTGTAGGATTTTGTCGATATGCGTCCAATAATGATCATTCAGTCATTTTGTAGAAGTGTAAGATTCCTTCCATCTACAGTACGTAGAATAAGTAAGACCATTTACATCCATTCCTCAGAATGTACTCGTCTTGTTGAACTCTCGCCAGAATGAAAGAGTTCGTTACTGTAGAGGAAATGCATCCTTAGCAGCAGGCAGCCCTACAAGATGATGTGTGGGTCAAAGGCAGCAATTCAAGCCCACACACCATCTCTGACATTTCACTTTAATTAGCTGTTACCATGGAACTAAATAAAGCTCACCACCACAATGACGGGAACAGATATCCTGATTATCTCGGAGCtacaccatgaacacacacacacacacgcaaatacacacacacacacacacacacacacacacacacacgcaagcacacacacgcaagcacacacacacttgatgtTCTAATCATTATTCACCATGAGGAAGAATTAGGGGGAAAAGATAGTAGCACACATGATGAAACAAATGTAGCGTATAGCAGTTCAAAAACATGTAGCTTTACACAGACTCCTGTCATCAGTGATAACGGTCATGGCACATGAAGAACATCAACACATCTCCTCTCATATCTATTTACCACTAAAATAGATATGTACAGCATTCCTTTAAAGGACTTCTTGGCACTGTGTATTTCTTCCAATTCCCTTCTTTGTTAGTCCTTTTTCTTTAGAACATACAGTAAAATGAATTTCAGTTGGCATTGACTCCTGCAGCCTATATGTTTTAGACATGAAAGAAAGATTCTCCCATTCCTTACGTCTGCTTTACACTGGGTCATAACTAAGTAATCTGTGTTGACTTTGACATCTTGCATAATtctctgttctgttgtcttcTCCCTGGTTTTTACTTCTAtttcctccccccatccctctttcCACCAGCCGGTTCCTAATGGTGAATCTGATGTTTATCATACCAGAAGGTTAGGCTTGGATGATAAATAAGGGGAGAATTTAGACTTTATTGGCAGAGGGCTGTACTGACGCCATAACAACGGGTTGAGAGGCCCCATTAATACTGAGCTTGATGCTGCAGCACACCACTCCCTCACCCGTTATGGGGACTTAGTAGAGATAGGACCATGTAATGTACAATGAAGGGAAACACAGCACTGagcagcacagtagagtacaatgcTGTACAGACTAGAGTGCAGAGTAAAGAGCAGTGTAGTACAGTAGAGTGCAGAGTAAAGAACAgtgtagtacagtagagtacagagtagtgtagtacagtagagtgcagagtagtgtagtagagtagagtacagagcagtgtagtacagtagagtacagagcagtgtagtacagtagagtgcagagtagtgtagtacagtacagagtaaagagcagtgtagtacagtagagtacagagtaAAGAGCAGTGTAGTACAGTAGAGTGCAGCGTAAAGAGCAGTGTAGTACAGTAGAGTGCAGAGTAAAGAGCAgtgtagtacagtagagtacagagtaAATAGTAGTGTAGTACAGTAGAGTGCAGAGTAAAGAGCAGTGTAGTACAGTAGAGTGCAGAGTAAAGAGCAggGTAGTACAGTAGAGTGCAGAGTAAAGAGCAGGGTAGTACAGTAGAGTGCAGAgtagtgtagtacagtacagagtaAAGAGCAGGGTAGTACAGTAGAGTGCAGAGTAAAGAGCAGTGTAGTACAGTAGAGTGCAGAGTAAAGAGCAGGGTAGTACAGTAGAGTGCAGAGAAGCAGCAGGTTAACGTAATGACGTATACAAATACAATATCAGTGGTTAACAGTGCAGTAGTGAGTAAGAAACTATATGGTAATTGCTTGAGCTGTTCTGAAGATCCAGGATAATGTGTATGTTAAAAACCTAAAAAGACATGCCAAAGACTGCATAGAGGTGTAACAATGTTGCAACATGTGGTAAGATAATgctgttgctgtatatattctaTGTACACATTTACATGTGGAATAGATATAAACGTACACACAACGTTACAGCAGAAATGTTAAAACATCAATTATAAGCAGACCGTGGTATCTGTAACAATCACATTGTTAAAAGGTACTCACTGCTAACTATCAACAGCTGGCTGGTTTTGATACCCAGTCAGAAATACACCTACTCAATGGCTTCGCCCTAACACAATCCTGCAGCCCAACAGCCTATCCATCCACCCATACACCTGATGTGTCTCTACATATAGTGTACACTCCTTATCATCTACACTCcttctaaaatgtatcaaaacACCATCACTACTAACTGTACAGGTAGCAGCTTGTCAGACTTCTCAAAATGGATGTGTGTGAGGGGGTGGCTTGAGCTCAACCTTGCTTCATTCTGGCAAagacattaaccaattaaaactATGTGAAAAAGTATATCCTTTCACATTAGTGAAAGAAATGTGTTTTGTATGCCTCATTTCTAACATGTAACGCATTCGTATCTCATAATGTGAATCAACTACAGAACGGGTTAAAGAGGACTACAACACCCATACCTCAGTGGCGAACTGCTGGAGCCCCCCGATGTTGATTGGTCCTTCCTCAGAGGCGTAGAGGTTACAGCCCCCcacacagaggtcagaggtcggGCACACCATGCCACAAGTCAGGCCTAAGGGGTTGTCTGACAAGATCGACTTCGCCGCCCCATAGTAgttctggaacacacacagaacacacaggcacacacacagaacacacagg

Function

NR:

description
hypothetical protein cypCar_00037644, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1089908 True 3484 lncRNA 0.42 3 23179974 23184228

Neighbor

gene id symbol gene type direction distance location
ptbp2a ptbp2 coding upstream 213171 22951161 ~ 22966803 (+)
LOC110535493 LOC106578494 coding upstream 422997 22750723 ~ 22756977 (+)
tlcd4a LOC106570700 coding upstream 438711 22712577 ~ 22741263 (+)
LOC110535486 LOC106578488 coding upstream 615867 22557109 ~ 22564107 (+)
LOC110535485 LOC106578486 coding upstream 625791 22541599 ~ 22554183 (+)
snx7 snx7 coding downstream 145522 23329750 ~ 23365999 (+)
LOC110535498 NA coding downstream 197301 23381529 ~ 23387901 (+)
LOC118937334 NA coding downstream 290907 23475135 ~ 23477150 (+)
LOC110535500 LOC106578508 coding downstream 310681 23494909 ~ 23531354 (+)
palmdb LOC106578510 coding downstream 379447 23563675 ~ 23604917 (+)
G955854 NA non-coding upstream 106513 23054117 ~ 23073461 (+)
G955830 NA non-coding upstream 115961 23007660 ~ 23064013 (+)
G955814 NA non-coding upstream 199511 22980133 ~ 22980463 (+)
G955785 NA non-coding upstream 203734 22893080 ~ 22976240 (+)
G955741 NA non-coding upstream 351651 22828005 ~ 22828323 (+)
G956465 NA non-coding downstream 63205 23247433 ~ 23247727 (+)
G956480 NA non-coding downstream 71805 23256033 ~ 23256396 (+)
G956484 NA non-coding downstream 76914 23261142 ~ 23261366 (+)
G956485 NA non-coding downstream 77428 23261656 ~ 23261858 (+)
G956494 NA non-coding downstream 87216 23271444 ~ 23271804 (+)
phldb2b tcpe other upstream 3410621 19740565 ~ 19799150 (+)
G951511 NA other upstream 4052889 19126665 ~ 19127085 (+)
G948710 NA other upstream 6578082 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 6634685 16543682 ~ 16565783 (+)
G956728 LOC106613263 other downstream 481060 23665288 ~ 23665930 (+)
G956797 NA other downstream 591544 23775772 ~ 23776845 (+)
G957942 NA other downstream 1416243 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 1610372 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 3529397 26713625 ~ 26797294 (+)

Expression


Co-expression Network