G956597


Basic Information

Item Value
gene id G956597
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23412325 ~ 23416289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1090665
gagctctaggggcgctatttcatttttggataaaaaacgttcccgttttaagcgcgatattttgtcacgaaaagatgcttgactatgcatattcttgacagttttggaaagaaaacactctgaagtttcagaatctgcaaagattttgtctgtaagtgccccagaactcattctacaggcgaaaccaagatgatgcatcacccaggaattagcagaatttctgaagctctgttttccattctctccttatatggctgtgattgcgcaacgaatgagcctacactttctgtcgttcgcccaaggtcttagcagcattgtgacgtatttgtaggcatatcattggaagattgaccataagagactacattttccaagtgtccgcctggtgtcctgcgtcgaatttggtgcgcaattgccagctgcttctactttaccatttgattcaggggagaaagcatgtgtccaagaacgatgtatcaatgaagagatatgtgaaaaacaccttgatgattgattctaaacaacgtttgccatgttttcagtcgatattatggagttaatttggaaaaaagtttgcgttttgaggactgaattttcggattttttttggtagccaaatgtgatgtataaaacggagctatttctaatacacaaggaatctttttggaaaaactgagcatctgctatctaactgagagtatcctcattgaaaacatcagaagttcttcaaaggtaaatgattttatttgaaggcttttatgtttttgttaatgttgcgtgctggatgctaacgctaatgctaacgctaaatgctaacgcgaaatgctaacgctagctagctacttttacacaaattattgttttcctatggttgagaagcatattttgaaaatctgagatgacagtgttgtttacaaaaggctaagcttgagagatggcatatttatttcatttcatttgcgattttcataaatagttaacgttgtgttatgctaatgagcttgctgatagatttacacaatcctggatacaggggttttttcatagctaaacgtgacgcagaaaacggagcgatttgtcctaaacaaataatctttcaggaaaaactgaacatttgctatctgagagtctcctcattgaaaacatctgaagttcttcaaaggtaaatgattttattttaatgcttttctgtttttttgtgtaaatgttgccagctgaatgctaaatgctacgctaaatgctacgttagccatcaatactgttacacaaatgcttgttttgcaatggttgagaagcatattttgaaaatctgagatgacagtgttgttaacaaaaggctaagcttgagagctagcatatttatttcatttcatttgcgattttcatgaatagttaacgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1090665 True 1399 lncRNA 0.37 2 23412325 23416289

Neighbor

gene id symbol gene type direction distance location
LOC110535498 NA coding upstream 25032 23381529 ~ 23387901 (+)
snx7 snx7 coding upstream 46326 23329750 ~ 23365999 (+)
ptbp2a ptbp2 coding upstream 445522 22951161 ~ 22966803 (+)
LOC110535493 LOC106578494 coding upstream 655348 22750723 ~ 22756977 (+)
tlcd4a LOC106570700 coding upstream 671062 22712577 ~ 22741263 (+)
LOC118937334 NA coding downstream 58846 23475135 ~ 23477150 (+)
LOC110535500 LOC106578508 coding downstream 78620 23494909 ~ 23531354 (+)
palmdb LOC106578510 coding downstream 147386 23563675 ~ 23604917 (+)
LOC118936499 LOC106578510 coding downstream 174550 23590839 ~ 23594014 (+)
LOC110535501 LOC106578509 coding downstream 219610 23635899 ~ 23661525 (+)
G956569 NA non-coding upstream 41762 23370317 ~ 23370563 (+)
G956564 NA non-coding upstream 52457 23358901 ~ 23359868 (+)
G956507 NA non-coding upstream 128760 23283357 ~ 23283565 (+)
G956498 NA non-coding upstream 134677 23277204 ~ 23277648 (+)
G956657 NA non-coding downstream 76783 23493072 ~ 23493446 (+)
G956682 NA non-coding downstream 128205 23544494 ~ 23544728 (+)
G956732 NA non-coding downstream 261791 23678080 ~ 23681424 (+)
G956739 NA non-coding downstream 271986 23688275 ~ 23688480 (+)
G956744 NA non-coding downstream 281490 23697779 ~ 23698068 (+)
phldb2b tcpe other upstream 3642972 19740565 ~ 19799150 (+)
G951511 NA other upstream 4285240 19126665 ~ 19127085 (+)
G948710 NA other upstream 6810433 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 6867036 16543682 ~ 16565783 (+)
G956728 LOC106613263 other downstream 248999 23665288 ~ 23665930 (+)
G956797 NA other downstream 359483 23775772 ~ 23776845 (+)
G957942 NA other downstream 1184182 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 1378311 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 3297336 26713625 ~ 26797294 (+)

Expression


Co-expression Network