G956732


Basic Information

Item Value
gene id G956732
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23678080 ~ 23681424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1090811
cccccccccccccccccccccccaTTTTGATGTCTGACGTTCAGGATTACAGGATAAAATCCCAGGGCATTTGATCACCTTTCTCATCTTAATCTCTAGTGCctattagggaatagggctgttaGAATGTGTCATTTTGTTACTACAAACTACAAAGCAATATAATGGGTTTTATTATAGTCTAATCATGGATCTCAGAGATTTGttgctaaatgtttttttttgtaaaaatgcAGTAAGTGCAGTTTGTTTTATGAATATTTGATATGGAAAACCATGCCCTATATATGTAACAAATCCTTCCTTCCTTGCATGACAAAATACTGTATTTACCTTTTATTCATTTAATTTATCATATCAATGACCCTGAACAGTTTTTAATAGCATGTCCTCTATATTAACCTTAATACTATAATACCATCAGGTTACAATCTATGTTTCAATTTCCTCTCATATCTACAATTGACCGTGTGACTTGTTATGAGCAAACTGTATATGACCCAATGATAATATCTTCTAATGACAAATGTAATTGCACAATACATTGTTTGAATTTGCCATGTTTGTTTGTCAGCACAGTAGTAACCCAACACGAGTCCTAGGTCAAAGCtctgtgctggaaaaccttgatAGTGCCTGGGTGAAATTGTCCCTTCTGTTtctcatgtgaatttcctttattttttcgGCTTCGGACCAGTGTAacttctcacttaaaacataGATGTTGCGTTTCATTTTGGTTCACCTCTGGTTCTGTCATACTGTGCATTTGCCTCCATTCTGGAGCTCTAGCCTTTAATCGGGTTACTTCTGGTCTCATCCACAGCCAGTCTCCTGACCGTCCTACAGGGTCAAAACATGCCCATAATCCTCTTAAACAGGCTAGAGGAGGCGTGTGTGGGGGGGCTGTGGTAGGGAATGACTGCTGCCTGCCAGCCAGACCATAAGAGGAAAAGATTCAGGCTGCCCGTGGACAACAACCGCTAACTGTGATGTTGGCTAGACTTCGCTCTAGTGCACCTATATGAAATTTGAAGCAGAGGCTTACTTTAAATACAGACAATTCTAAAGGACATTTGTCCACTCCTTTGAAATTTACTACAAGAGAGTATTTATTTTTCCACAAACGCCATCTCCTCATTAACAGACAAGCATAGTTTAGGTTCCTCTCTATACTTTCTATGTCTTCTTTCTGATAACAGAGACACTGACTCAATGACATATATACCGAGGAACATCCTGAAAGTATATACTTTAACTCTTTTTTTAGGGGTACTCTATCAGAAGACACTCCCCATCAGTAGCTATTTTGGAATTCCATTGTCTCTTAACCACCACCAGCTGTGGTGTCTGTCGACTTGTTGTGCCTGCCAGACAGTTAAGTCAGGGTGAGATTCACTCCTttcagtctgtctgtatgtcGTCTCTCTCGTCAGACTCGGGGCATCCTGCACAGTGCCTGTGAGAAGAGACTAGTCAGTGAGCTAATAATCGTCATCAGTTGAGTTGTGAGAACGCAGCAGCAGGAACAGACGGTGGAGGGAGTGTTGCCTCGGAGCCTCAGGCAACCCACCGTCCTCCCTGTGACACTCTATTAATTCACCCTAGAAGACGACAGAGAAATGGGCAAAGTTAATGATGGATGTCTTATAGTCCTCACCAGgcacttgttctctctctctcttccatacgTACTATTAATGACAACAACATTTATGTCAGAATGCAAGATGCCTCAATTGAATTTTGCCTTTTTATTGTAAGCGATTGAATTAAACTTGCATTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1090811 True 1791 lncRNA 0.41 2 23678080 23681424

Neighbor

gene id symbol gene type direction distance location
LOC110535505 LOC106578511 coding upstream 2597 23666722 ~ 23675483 (+)
LOC110535501 LOC106578509 coding upstream 16555 23635899 ~ 23661525 (+)
palmdb LOC106578510 coding upstream 73163 23563675 ~ 23604917 (+)
LOC118936499 LOC106578510 coding upstream 84066 23590839 ~ 23594014 (+)
LOC110535500 LOC106578508 coding upstream 146726 23494909 ~ 23531354 (+)
itprid1 LOC106578515 coding downstream 41789 23723213 ~ 23747923 (+)
ppp1r17 ppp1r17 coding downstream 81604 23763028 ~ 23765913 (+)
trdmt1 trdmt1 coding downstream 295924 23977348 ~ 23996262 (+)
cubn cubn coding downstream 315164 23996588 ~ 24049588 (+)
rsu1 rsu1 coding downstream 377300 24058724 ~ 24094985 (+)
G956682 NA non-coding upstream 133352 23544494 ~ 23544728 (+)
G956657 NA non-coding upstream 184634 23493072 ~ 23493446 (+)
G956597 NA non-coding upstream 261791 23412325 ~ 23416289 (+)
LOC110535498 NA non-coding upstream 290179 23381529 ~ 23387901 (+)
G956569 NA non-coding upstream 307517 23370317 ~ 23370563 (+)
G956739 NA non-coding downstream 6851 23688275 ~ 23688480 (+)
G956744 NA non-coding downstream 16355 23697779 ~ 23698068 (+)
G956771 NA non-coding downstream 45673 23727097 ~ 23727416 (+)
G956772 NA non-coding downstream 46906 23728330 ~ 23728626 (+)
G956777 NA non-coding downstream 59317 23740741 ~ 23740964 (+)
G956728 LOC106613263 other upstream 12150 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 936833 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 3908727 19740565 ~ 19799150 (+)
G951511 NA other upstream 4550995 19126665 ~ 19127085 (+)
G948710 NA other upstream 7076188 16554200 ~ 16601892 (+)
G956797 NA other downstream 94348 23775772 ~ 23776845 (+)
G957942 NA other downstream 919047 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 1113176 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 3032201 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 3247252 26928676 ~ 26929027 (+)

Expression


Co-expression Network