XLOC_028673


Basic Information

Item Value
gene id XLOC_028673
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16295524 ~ 16313944 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058169
CAAGGACGCAAGAGCCAAACCTGAAGACTCTCCCCCCTCCATCCCTCCCTACTGTTCTCTTTCCATTCGGGGACATTTGGGAGCCTTGGGAACGGTTTCCATGGCGACAGTGACTGCAGACGAGGCGAGTGTGCTGAGACAGGGATGTGAACGCTCTGCCACTCTCGTCTCATGCGGAGCGCTGGTCTGCCTCATTCCTCCCCGCTCATTTCTACAATGAGCTGCTAGATTTGTTTGACTGTTAAAAGAGGAGCTTTcccttgtttattatttataggtTTGTGGCAAACAAAGCAGATGTGCAAGATGCataattctatacatatacatataattcTATACATATTTATATCCCTGTGTGCCTGCATTAATGTTCGGTTAATGGCAGGGTAAATAGACTGcttttaactaaattaaattatactATTTTCTTAATGCTATTGTTTAATACccttttttttaaaaccacattTTAGATTAGCAACAgacctattaaaataaaatccttgaaaatgtttttttgttgttgttgttgttattgttgctgGTGTTTAAATAAGGATTATATTGAAAGCCTGGATTTGTAAAATAGGTCACATGGTATATATTCTGTGTGGTTTTTATTAACCAATGTTTTTGAATATAGAATTATTCtgtttagtttctttattcacTATTATAATTTCTGTCATCTTCACCTTTTTCAGGTTATCAATATTTTTTCAGATATATTAAAGTCCTCATGAAATCAG
>TCONS_00058171
gacaaacaaacagTTGCTAATGGAGCACAAATGGTTTAGTCCATTGTTTCAAACCCCGCTCAGCACCGCCTAAAAAGAAGAGGTGAAAGCTGATTCGCTGCCGGCGATAAACGTCACATCCGCAAGTTTCTTATGAGTACGTGAGACAGACGTTTTTAGCCACGTTTTTCTTACGATCGTTGAAGAGACAACAGCTGAAACTTCCGTCCTTGGTCGAAGTCTTTTTGTTTAGGAATACAAGAGGCCTTTTTTATTCTGCTTTAACTCTCGCTAATTTTTATAGCTCTTTTGTACAACCAAATACTTTTTTGGGGGTAATGTGTCCTGAAATCATCACTATGAAGAAAAGCTACCAGAAGGACATCAAGACCGCGCCTGATCATAAACAGAAATGGTCAAAATCAAAGAAAAGGACAATTCTTCAAGCAAAAGTCGACGAAAGAAGGGTACGCGTCCGGGCCTGGTCATCCAGGAGACCGCAGCTCAGCCCAGGCCGTGTCGAAAGAGCAGCTGCGGGCGATCAGAGATTTGTACCGTCTGTAGCCATGGCACCAAGAAACACCACGCAGTACTTAATGGACATTGAATCGCTGGACTTCCAGCAGCGAGACTTCGAGGAGCTGTTCTTCAGGAATGAAATCTGAGGTGTTTCCCCTGAAACCTGACTTGATCTCGTCGGAAAGAGAAGACCGGGCAGCTGTGAACGCATAGACCGTAATATCATTGCGCAGACTCCAACTCGGGGAGACGGAACGCTCTGCGTCACAGCTGCGCGATGACGTGTAAGCCACGCCCACCAGCACGTGGCCAGCAGTGTGCATGCATTGTTCTGCCAACGGATGCATGTGTGTTTTGAGAGACTTTTACAGGTTGCCGACCTTCCTCGATGGATCTAAGCGGTCTGTGCAACCCACTCAGAGCCTTGGGACAAAGCCACATGGCTGCCTGGTCACCACTGCTGGGGGTTTTTTGATTGTCTTGCACAATTGGGGCCCATGGAGTTTTAGGACCATCACTGTTGAACATTAAGCATTCGCCAGTTTCCAAAATGACTGAGATGACCAATCAAATAAAAGTAGGCATGGCTTGCCCAACGCTTCAGTTTGTGAAAACAGATGTATTGGAAAAGCTTGTGTGAATCAGCTGTTTAGTGAAGGACAAATGAACCAGTCTTCCGCCCTCAGGCAAAGCACACTTCAATACAAGATAGAGAACAAAGACTCTCCCCCCTCCATCCCTCCCTACTGTTCTCTTTCCATTCGGGGACATTTGGGAGCCTTGGGAACGGTTTCCATGGCGACAGTGACTGCAGACGAGGCGAGTGTGCTGAGACAGGGATGTGAACGCTCTGCCACTCTCGTCTCATGCGGAGCGCTGGTCTGCCTCATTCCTCCCCGCTCATTTCTACAATGAGCTGCTAGATTTGTTTGACTGTTAAAAGAGGAGCTTTcccttgtttattatttataggtTTGTGGCAAACAAAGCAGATGTGCAAGATGCataattctatacatatacatataattcTATACATATTTATATCCCTGTGTGCCTGCATTAATGTTCGGTTAATGGCAGGGTAAATAGACTGcttttaactaaattaaattatactATTTTCTTAATGCTATTGTTTAATACccttttttttaaaaccacattTTAGATTAGCAACAgacctattaaaataaaatccttgaaaatgtttttttgttgttgttgttgttattgttgctgGTGTTTAAATAAGGATTATATTGAAAGCCTGGATTTGTAAAATAGGTCACATGGTATATATTCTGTGTGGTTTTTATTAACCAATGTTTTTGAATATAGAATTATTCtgtttagtttctttattcacTATTATAATTTCTGTCATCTTCACCTTTTTCAGGTTATCAATATTTTTTCAGATATATTAAAGTCCTCATGAAATCAG
>TCONS_00058170
gacaaacaaacagTTGCTAATGGAGCACAAATGGTTTAGTCCATTGTTTCAAACCCCGCTCAGCACCGCCTAAAAAGAAGAGGTGAAAGCTGATTCGCTGCCGGCGATAAACGTCACATCCGCAAGTTTCTTATGAGTACGTGAGACAGACGTTTTTAGCCACGTTTTTCTTACGATCGTTGAAGAGACAACAGCTGAAACTTCCGTCCTTGGTCGAAGTCTTTTTGTTTAGGAATACAAGAGGCCTTTTTTATTCTGCTTTAACTCTCGCTAATTTTTATAGCTCTTTTGTACAACCAAATACTTTTTTGGGGGTAATGTGTCCTGAAATCATCACTATGAAGAAAAGCTACCAGAAGGACATCAAGACCGCGCCTGATCATAAACAGAAATGGTCAAAATCAAAGAAAAGGACAATTCTTCAAGCAAAAGTCGACGAAAGAAGGGTACGCGTCCGGGCCTGGTCATCCAGGAGACCGCAGCTCAGCCCAGGCCGTGTCGAAAGAGCAGCTGCGGGCGATCAGAGATTTGTACCGTCTGTAGCCATGGCACCAAGAAACACCACGCAGTACTTAATGGACATTGAATCGCTGGACTTCCAGCAGCGAGACTTCGAGGAGCTGTTCTTCAGGAATGAAATCTGAGGTGTTTCCCCTGAAACCTGACTTGATCTCGTCGGAAAGAGAAGACCGGGCAGCTGTGAACGCATAGACCGTAATATCATTGCGCAGACTCCAACTCGGGGAGACGGAACGCTCTGCGTCACAGCTGCGCGATGACGTGTAAGCCACGCCCACCAGCACGTGGCCAGCAGTGTGCATGCATTGTTCTGCCAACGGATGCATGTGTGTTTTGAGAGACTTTTACAGGTTGCCGACCTTCCTCGATGGATCTAAGCGGTCTGTGCAACCCACTCAGAGCCTTGGGACAAAGCCACATGGCTGCCTGGTCACCACTGCTGGGTAACTGTGGTAATACTTGAATGTGAATTGACAAGTGCACTCAGAGCTCCTGTAGTATGAGTTATATTTTGagaaataatttgtaaatattgaTTGTATTAAATGCCTAAGCTTGTGTTTACTATTAAAACTTAAAtctgatattttgtgttcatttgttgtttgtttatgcgTTGTTGTTTTGAGCTTCATTATACTATATTTGAAAAAACATATTTGCAGACATCCTGTTTTACTATTAATCACATTTTTTCTATGTGGTGTGGGTTTTTTTGTAAGGGGGATTGTGCAAATGTTTAGGAGTGATGGTTTGTAATTGAGTAAtgtaactttattaaaataaataaatacactggcGTACTGAAGAagaattgaaattgaattgaaattgaaactaagcttttaaaacactttaaatgtacattatacactttactttggattttagttcattttaaattaagtcTGTAGTTGTCTGTACAGTAgtaaacatttgaagtggatcaaaaatttGTTCAGTAGATTTAAGGTGACTGATTTTTGatccattttaaatgtatatgctACTATTTGTGAGCCCAGTGCATCTGGTaccaaaactattgtttagatgtttgatgaaagtacatttaaaatgctGAGATCGACTTTCATCTCACTGTTTATACTGTTTTGAGTTGGGAGGAGGGGTTTTTTGATTGTCTTGCACAATTGGGGCCCATGGAGTTTTAGGACCATCACTGTTGAACATTAAGCATTCGCCAGTTTCCAAAATGACTGAGATGACCAATCAAATAAAAGTAGGCATGGCTTGCCCAACGCTTCAGTTTGTGAAAACAGGTGTGAGATGTATTGGAAAAGCTTGTGTGAATCAGCTGTTTAGTGAAGGACAAATGAACCAGTCTTCCGCCCTCAGGCAAAGCACACTTCAATACAAGATAGAGAACAAAGACTCTCCCCCCTCCATCCCTCCCTACTGTTCTCTTTCCATTCGGGGACATTTGGGAGCCTTGGGAACGGTTTCCATGGCGACAGTGACTGCAGACGAGGCGAGTGTGCTGAGACAGGGATGTGAACGCTCTGCCACTCTCGTCTCATGCGGAGCGCTGGTCTGCCTCATTCCTCCCCGCTCATTTCTACAATGAGCTGCTAGATTTGTTTGACTGTTAAAAGAGGAGCTTTcccttgtttattatttataggtTTGTGGCAAACAAAGCAGATGTGCAAGATGCataattctatacatatacatataattcTATACATATTTATATCCCTGTGTGCCTGCATTAATGTTCGGTTAATGGCAGGGTAAATAGACTGcttttaactaaattaaattatactATTTTCTTAATGCTATTGTTTAATACccttttttttaaaaccacattTTAGATTAGCAACAgacctattaaaataaaatccttgaaaatgtttttttgttgttgttgttgttattgttgctgGTGTTTAAATAAGGATTATATTGAAAGCCTGGATTTGTAAAATAGGTCACATGGTATATATTCTGTGTGGTTTTTATTAACCAATGTTTTTGAATATAGAATTATTCtgtttagtttctttattcacTATTATAATTTCTGTCATCTTCACCTTTTTCAGGTTATCAATATTTTTTCAGATATATTAAAGTCCTCATGAAATCAG

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0070528 protein kinase C signaling biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1904029 regulation of cyclin-dependent protein kinase activity biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058169 False 752 lncRNA 0.36 2 16295524 16303001
TCONS_00058171 False 1945 lncRNA 0.43 8 16295524 16313944
TCONS_00058170 True 2639 lncRNA 0.40 7 16295524 16313944

Neighbor

gene id symbol gene type direction distance location
XLOC_028672 BX649423.3 coding downstream 81984 16213424 ~ 16213540 (-)
XLOC_028671 NA coding downstream 103341 16127673 ~ 16192183 (-)
XLOC_028670 atp2b1a coding downstream 171105 16076719 ~ 16124419 (-)
XLOC_028669 NA coding downstream 220023 16041555 ~ 16075501 (-)
XLOC_028668 NA coding downstream 253343 16040114 ~ 16042181 (-)
XLOC_028675 epyc coding upstream 3352 16317296 ~ 16334362 (-)
XLOC_028676 kera coding upstream 23212 16337156 ~ 16345227 (-)
XLOC_028677 lum coding upstream 35098 16349042 ~ 16354292 (-)
XLOC_028678 dcn coding upstream 54818 16368762 ~ 16443053 (-)
XLOC_028679 wu:fc23c09 coding upstream 133541 16447485 ~ 16451375 (-)
XLOC_028667 NA non-coding downstream 257667 16034297 ~ 16037857 (-)
XLOC_028684 NA non-coding upstream 449761 16763705 ~ 16824556 (-)
XLOC_028690 NA non-coding upstream 799435 17113379 ~ 17216223 (-)
XLOC_028696 NA non-coding upstream 1257351 17571295 ~ 17629444 (-)
XLOC_028702 BX890572.1 non-coding upstream 1422499 17736443 ~ 17737812 (-)
XLOC_028707 NA non-coding upstream 1561127 17875071 ~ 17882930 (-)

Expression


Co-expression Network