G956824 (LOC108280739)


Basic Information

Item Value
gene id G956824
gene name LOC108280739
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23811621 ~ 23812097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1090913
ggaaagtcttcccagaagagtggagaatgttatagcagcaaagggtggaccaattccatattattacctatgattttggaatgagatgtttgacgactTTTGGAGATCTCGTGTATTTGTAGGATAATCTACCTCTTCACAAATACACTGAGAGTGTGTTACTGTCAGTGCTGATCTCCCAGTTTAGTAAACATGCTACATGTTCGGAGGACATTGGATAACAAACTAACCTCTCAACAAATATCCCAGCCTGCACTGCGTGTACGATGCTGCGGAAGCGTGGTTTCTCTTCGGTCCGGCGCAGCATCAGACCCATCTGACGCGTGAAGGTGGAGGCCAGCCAATCACGAACCTCTGACGGCACAGAGTCTGACTGGATGTCACTGAGCTCATCCTCCGTGTCCACCAATCGCCTGCGGAGAGGGAcggacacacgcagacacacatgtATGTCCAAATACACGCatggaagcacac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1090913 True 477 lncRNA 0.49 1 23811621 23812097

Neighbor

gene id symbol gene type direction distance location
ppp1r17 ppp1r17 coding upstream 45708 23763028 ~ 23765913 (+)
itprid1 LOC106578515 coding upstream 63698 23723213 ~ 23747923 (+)
eif1b LOC106578512 coding upstream 133327 23675584 ~ 23678294 (+)
LOC110535505 LOC106578511 coding upstream 136138 23666722 ~ 23675483 (+)
LOC110535501 LOC106578509 coding upstream 150096 23635899 ~ 23661525 (+)
trdmt1 trdmt1 coding downstream 165251 23977348 ~ 23996262 (+)
cubn cubn coding downstream 184491 23996588 ~ 24049588 (+)
rsu1 rsu1 coding downstream 246627 24058724 ~ 24094985 (+)
c1ql3a c1ql3 coding downstream 284993 24097090 ~ 24103710 (+)
dtx3l1 LOC106578522 coding downstream 334379 24146476 ~ 24149671 (+)
G956822 NA non-coding upstream 3668 23807727 ~ 23807953 (+)
G956820 NA non-coding upstream 8352 23803053 ~ 23803269 (+)
G956819 NA non-coding upstream 9162 23802201 ~ 23802459 (+)
G956812 NA non-coding upstream 20225 23791135 ~ 23791396 (+)
G956811 NA non-coding upstream 20935 23790374 ~ 23790686 (+)
G956839 NA non-coding downstream 15134 23827231 ~ 23827730 (+)
G956856 NA non-coding downstream 47172 23859269 ~ 23859787 (+)
G956862 NA non-coding downstream 55556 23867653 ~ 23867897 (+)
G956863 NA non-coding downstream 58089 23870186 ~ 23870407 (+)
G956868 NA non-coding downstream 64490 23876587 ~ 23876813 (+)
G956797 NA other upstream 34776 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 145691 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1070374 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4042268 19740565 ~ 19799150 (+)
G951511 NA other upstream 4684536 19126665 ~ 19127085 (+)
G957942 NA other downstream 788374 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 982503 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2901528 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 3116579 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 3596905 27409002 ~ 27412913 (+)

Expression


Co-expression Network