XLOC_028676 (kera)


Basic Information

Item Value
gene id XLOC_028676
gene name kera
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16337156 ~ 16345227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055593
CACAACTCAACGCATATCTGTCAAACATTCCCACACCCCCTTTCCCAAAGCTCACCAGCTGATGTCAAAGGTTTGGCCTTGGGGAAGTCGCACTACCAACAATGGTAATCTAATAAGGCTGTGTCTTCTGATGCTTGTCGGGGCCAGAAAGAAAGTAGGAGATTCTGCAGATTGAACTCAAGCTGGGGAAGAGAACAGGCGGATCGAGAGACGACAACCCCAAAACACCCCAATACTCCATACTCCGTCTCCACCTCCACAAACCAAATCAGCTCTGTGACTGAGATGAGCAGGTTAAACCTAACTATGGAGGTACTCTTGGTAGCATTTGTGGCCGTGTTTTTGACCAGCCAAGTCCACTCTGATGAAATTCCATATGAGCACCTGATGTCTCAACTCCAGGCATGTCCTAAAGAGTGCAACTGCCCTCCCAACTTCCCTAATGCGGTTTACTGTGACAACAAGGGGCTGAAAAGTATACCTGTCATCCCCCCCTACACTTGGTACCTGTACCTTCAAAACAACCTAATTGATGTTCTCTCAGCCAATGCTCTGCGCAACGCCACACAGCTAAAGTGGATAAACCTCAACCGCAACAAAATCACAACTGAAGGCCTGGAAGTAGATGCTCTTAGAGCAATGTCCAACCTTGTTCATCTCTACATGGAAGACAACTTGCTGTCTTCTATTCCATCTCCTCTGCCAGCCAAATTAGAGCAGTTAAGGCTGTCCCGAAATAAAATCTCGAAGATCCCACCCGGTGTCTTCTCTGGAATGGGTCATCTTACCCTGCTGGATTTGCAAAGCAACAAGTTACAAGATGATGCAGTCACAGAGGTCAGTCTAAAAGGCCTCAATAACTTGATCCAGATCAATTTAGCAAAGAATCAGCTAAACAGTATGCCTCTTGGCCTACCACCCACAACTACACAAATCTTTTTGGACGGCAACAACATTGAGAAGATTCCAGCTGAGTACTTCAAGGGTCTTCCTAAAGTCGCGTCTCTCAGGCTCAACCGCAATAAGCTAGCTAATGGGGGTATcccaaaaaatgtgtttaacCTTTCCAGCATCCTGGATCTACAACTTTCTCACAACCAACTCACAGAGGTGCCTGTTATCTCCTCTGGACTGGAGCACCTGCATCTAGACCACAATAAGATCAAGAGCGTGAATAGCTCTGACATCTGTCCACCTGGTGTGCTCGATGATCACCTGGAGGAGAAGAGTCCACGTCTCCGCTACCTTCGTCTCGATGGTAATGAGATCCAACCCCCTATTCCACGAGAGCTGATGACATGTTTCCGTCTCCTCAGGGCTGTTGTCATATAAAGGTGCAACACCATCAAGATAATCCATTTCATCAATCAGAACTGACAATTTTAGTAAACTGAAACACTTGAAAaggatctgaaaaaaaaacttaaaataaatactgtacactGCTGAAAAGACCACTAGAATGGATTCTGGTTACTTCTTATCTCATGTTAATTGAGCAGGTGACTAGCAAGACCTTTCTGGTAGAGCTTTTGACAAAGAATGAATTAAGTCCATGAATAAGAAGCTTATAAAAAATTCCGATGGATACCTACATACAAAATACAACTAAGAGTGTGGTATCCTGGCCTTTTCAGCAGAGTAAAGATCCATAAGACTGATTTATATGTGCATTTGTAGATGGTTTCTCATGGCTGTATTGTAAAACCATTGTGCCTTCCTTAATTTCATACATAGACTAGCTGGAAACATCATTACATGTTAAATGTTCTTACAATGGAAGAGAGATCTAAACAACAGTTGTACCCTATAAATTACTTAATCTTGGTAGGAGCAGGATTAACCAGAAATATTTTCACGGTCCACCCTATTCTGAGATGTTTTAAGCAGGAGAGTAATAAGAAGGGTATAAATGGAGGTCGGAGCCTGCTCCAAGTGGGTGGGCCTTCGAGCTCCAAGTGGGTTGTACAAACTTGgagctttaatttatttaacgTCTTTTACATGACTCAGAGTCCAATATTGTGcaatgtgctttatgaatgtctacatCTACCCTAACACTAAATCCaatctcacagtaacctgttgtgttttattaacgtctacacctaccccaaccccaaaccccatatcacagtaacctgatgtgttttaatAATATCTGCAACACCTAaaccacctaaacccaacctacttgtaTTTTAAGTCCCTCCGacttggaggtcacccaacctacttgcagtgtaatccctcccacttggaggtctctgggctgcagcgatacctacttgAGAGTTGTGGTCTAATTATAGAGCCAAATTTCCTGGAATTGAACTTAGTACATAGTGGTGGTTTACTGGATTTCACTAAAAGCATAGTAAGTCTCAATGACAAAACGTACCAAAATAAGTTTAAAGTTAGATAAATGGTAGCAATTGCAATTGTTTACATCAATTGTAAGTAATGAAATGTACTGGCATGTAtacttttttaaacaatgtttaccTCTACTTTTTGTACATCTTCGCAACtttgtaaaaacaatatttcAATATTCAATGAAAATTTTGTTTGAAATACTTATTCTATAATTTCAGCACCTCAAATTTTATCATTAATTTTGAAAATTGCAGCATTTTCAAACCAGATGACATACTGTACTGTGACAGAGTTTTAATGTATATAATAGTTTAAATTTTGCAGTTGACAATTGACTGGTTTTAAGATGCATTTTCTctatataaaaataatgtaaacattctTTTTCAGCGCACAAAtgtgacaattttttttcatgtttttattaattactgAAATTAACATCAAAAACTGTGAGAACCATTAGAAAAATGTAATATGATATACATTTTTGTTCAATGTTTCTGATTAAACTGGTTTCAGTGGTC
>TCONS_00055594
CCAAAGCAAGAGATACAGTAGAAGAGACGTAAAAAGATAACGGTTAAACCTAACTATGGAGGTACTCTTGGTAGCATTTGTGGCCGTGTTTTTGACCAGCCAAGTCCACTCTGATGAAATTCCATATGAGCACCTGATGTCTCAACTCCAGGCATGTCCTAAAGAGTGCAACTGCCCTCCCAACTTCCCTAATGCGGTTTACTGTGACAACAAGGGGCTGAAAAGTATACCTGTCATCCCCCCCTACACTTGGTACCTGTACCTTCAAAACAACCTAATTGATGTTCTCTCAGCCAATGCTCTGCGCAACGCCACACAGCTAAAGTGGATAAACCTCAACCGCAACAAAATCACAACTGAAGGCCTGGAAGTAGATGCTCTTAGAGCAATGTCCAACCTTGTTCATCTCTACATGGAAGACAACTTGCTGTCTTCTATTCCATCTCCTCTGCCAGCCAAATTAGAGCAGTTAAGGCTGTCCCGAAATAAAATCTCGAAGATCCCACCCGGTGTCTTCTCTGGAA

Function

symbol description
kera Predicted to act upstream of or within visual perception. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system; corneal epithelial cell; epidermis; and eye. Human ortholog(s) of this gene implicated in arcus senilis; cornea plana; and corneal dystrophy. Orthologous to human KERA (keratocan).

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-041210-165 Predicted to act upstream of or within visual perception. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system; corneal epithelial cell; epidermis; and eye. Human ortholog(s) of this gene implicated in arcus senilis; cornea plana; and corneal dystrophy. Orthologous to human KERA (keratocan).

Ensembl:

ensembl_id ENSDARG00000056938

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055593 False 2909 mRNA 0.40 3 16337156 16345227
TCONS_00055594 True 524 mRNA 0.46 2 16339518 16341801

Neighbor

gene id symbol gene type direction distance location
XLOC_028675 epyc coding downstream 2794 16317296 ~ 16334362 (-)
XLOC_028673 NA coding downstream 23212 16295524 ~ 16313944 (-)
XLOC_028674 NA coding downstream 35914 16299656 ~ 16301242 (-)
XLOC_028672 BX649423.3 coding downstream 123616 16213424 ~ 16213540 (-)
XLOC_028671 NA coding downstream 144973 16127673 ~ 16192183 (-)
XLOC_028677 lum coding upstream 3815 16349042 ~ 16354292 (-)
XLOC_028678 dcn coding upstream 23535 16368762 ~ 16443053 (-)
XLOC_028679 wu:fc23c09 coding upstream 102258 16447485 ~ 16451375 (-)
XLOC_028680 btg1 coding upstream 190946 16536173 ~ 16545085 (-)
XLOC_028681 caprin2 coding upstream 269799 16615026 ~ 16628802 (-)
XLOC_028669 NA non-coding downstream 261655 16041555 ~ 16075501 (-)
XLOC_028684 NA non-coding upstream 418478 16763705 ~ 16824556 (-)
XLOC_028690 NA non-coding upstream 768152 17113379 ~ 17216223 (-)
XLOC_028696 NA non-coding upstream 1226068 17571295 ~ 17629444 (-)
XLOC_028702 BX890572.1 non-coding upstream 1391216 17736443 ~ 17737812 (-)
XLOC_028707 NA non-coding upstream 1529844 17875071 ~ 17882930 (-)

Expression


Co-expression Network