G957299


Basic Information

Item Value
gene id G957299
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23900958 ~ 23901322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1091432
ATCcaatggtatccaattgttagtagttactatcttgtctcatcgctacaactcccatacaggcttgggagagatgaaggtcgaaagtcatgtgtcctctgaaacacaatccAACAAggtcgcactgcttcttaacacagcgcgcatccaacccggaagccagccacaccaatgtgtcagaggaaacactgtgcacctggcgaccttggttagcgtgcactgcacctggcccgccacaggagtcgctggtgcgcgctgagacaaggatatccctaccggccaagccctccctaacccggacgacactaggccaattgtgtgtcgccccacggacctctcgTCGCGGCCGGCTGAAACAGAGCCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1091432 True 365 lncRNA 0.56 1 23900958 23901322

Neighbor

gene id symbol gene type direction distance location
ppp1r17 ppp1r17 coding upstream 135045 23763028 ~ 23765913 (+)
itprid1 LOC106578515 coding upstream 153035 23723213 ~ 23747923 (+)
eif1b LOC106578512 coding upstream 222664 23675584 ~ 23678294 (+)
LOC110535505 LOC106578511 coding upstream 225475 23666722 ~ 23675483 (+)
LOC110535501 LOC106578509 coding upstream 239433 23635899 ~ 23661525 (+)
trdmt1 trdmt1 coding downstream 76026 23977348 ~ 23996262 (+)
cubn cubn coding downstream 95266 23996588 ~ 24049588 (+)
rsu1 rsu1 coding downstream 157402 24058724 ~ 24094985 (+)
c1ql3a c1ql3 coding downstream 195768 24097090 ~ 24103710 (+)
dtx3l1 LOC106578522 coding downstream 245154 24146476 ~ 24149671 (+)
G957285 NA non-coding upstream 8697 23892037 ~ 23892261 (+)
G957283 NA non-coding upstream 10809 23890029 ~ 23890149 (+)
G957279 NA non-coding upstream 18109 23882561 ~ 23882849 (+)
G956868 NA non-coding upstream 24145 23876587 ~ 23876813 (+)
G956863 NA non-coding upstream 30551 23870186 ~ 23870407 (+)
G957301 NA non-coding downstream 1297 23902619 ~ 23902832 (+)
G957307 NA non-coding downstream 18377 23919699 ~ 23919959 (+)
G957316 LOC106583515 non-coding downstream 31691 23933013 ~ 23933469 (+)
G957344 NA non-coding downstream 89233 23990555 ~ 23991124 (+)
G956797 NA other upstream 124113 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 235028 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1159711 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4131605 19740565 ~ 19799150 (+)
G951511 NA other upstream 4773873 19126665 ~ 19127085 (+)
G957942 NA other downstream 699149 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 893278 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2812303 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 3027354 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 3507680 27409002 ~ 27412913 (+)

Expression


Co-expression Network