G957406


Basic Information

Item Value
gene id G957406
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24140823 ~ 24141306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1091543
CTCTAAAATGacactacattatttaccattcatttctattgggcaaatAAAAATACATCTGAAACGGAACCAAAacgaactgcaaatgcatcctaCAAGTTTGTAGACTGATGTtgtcattgcatgctaggaatatgttTAGCAtgcaatataaactcagcaaaaaaagaaaagtccctttttcaggaccctgtctttcaaagataattcgtaaaaatccaaataacttcacagatcttcattgtaaagggttaaaaacactttttccatgcttgttcaatgaaccataaacaatgaatgaacatgcacctgtggaacgttcgttaagacactaacagcttacagatggtaggcaattaaggtcacagttatgaaaacttaggacactaaagaggcctttctactgactctgaaaaacaccaaaagaaagattcccagggtccctgctcatctgtgtgaacgtgccttaggcatgctgcaagga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1091543 True 484 lncRNA 0.37 1 24140823 24141306

Neighbor

gene id symbol gene type direction distance location
c1ql3a c1ql3 coding upstream 37113 24097090 ~ 24103710 (+)
rsu1 rsu1 coding upstream 45838 24058724 ~ 24094985 (+)
cubn cubn coding upstream 91235 23996588 ~ 24049588 (+)
trdmt1 trdmt1 coding upstream 144561 23977348 ~ 23996262 (+)
ppp1r17 ppp1r17 coding upstream 374910 23763028 ~ 23765913 (+)
dtx3l1 LOC106578522 coding downstream 5170 24146476 ~ 24149671 (+)
LOC110535520 LOC106578523 coding downstream 31790 24173096 ~ 24188768 (+)
steap2 steap2 coding downstream 47835 24189141 ~ 24198511 (+)
LOC110535521 mmp16 coding downstream 154183 24295489 ~ 24367062 (+)
LOC110535524 LOC106578570 coding downstream 356648 24497954 ~ 24532037 (+)
G957344 NA non-coding upstream 149699 23990555 ~ 23991124 (+)
G957316 LOC106583515 non-coding upstream 207354 23933013 ~ 23933469 (+)
G957307 NA non-coding upstream 220864 23919699 ~ 23919959 (+)
G957301 NA non-coding upstream 237991 23902619 ~ 23902832 (+)
G957407 NA non-coding downstream 139 24141445 ~ 24141684 (+)
G957414 NA non-coding downstream 10668 24151974 ~ 24152283 (+)
G957415 NA non-coding downstream 11765 24153071 ~ 24153331 (+)
G957417 NA non-coding downstream 14436 24155742 ~ 24156009 (+)
G957391 NA non-coding downstream 58079 24199385 ~ 24199770 (+)
G956797 NA other upstream 363978 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 474893 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1399576 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4371470 19740565 ~ 19799150 (+)
G951511 NA other upstream 5013738 19126665 ~ 19127085 (+)
G957942 NA other downstream 459165 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 653294 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2572319 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2787370 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 3267696 27409002 ~ 27412913 (+)

Expression


Co-expression Network