G957391


Basic Information

Item Value
gene id G957391
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24199385 ~ 24199770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1091528
CACCACATTCTGAAATTCCATTTTTGTcctccccagttttatcattggaatgtgatacaaaactaGGAAATGTTGTGCCTCAGGACCATGTGGACGCCTCCGAGCAGTCGGGAAgttgtttggagtgtttatctgacagaagataattatatatatatatatgtccccccacttctaaaaccaattACGATCCTGACAAGATCCTGAGCCCCATTATCGtgtcattcatctgccgccatcacctcatgtttcagcatgataacgcacagccccatgtcgcaaggatctgtgcacaattcctggaagctgaaaatgtcctagttctCTGGATCGACTtgacgacagcgtgttccagttccctccaatatccagccgaatcacacagc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1091528 True 386 lncRNA 0.45 1 24199385 24199770

Neighbor

gene id symbol gene type direction distance location
steap2 steap2 coding upstream 874 24189141 ~ 24198511 (+)
LOC110535520 LOC106578523 coding upstream 10617 24173096 ~ 24188768 (+)
dtx3l1 LOC106578522 coding upstream 49714 24146476 ~ 24149671 (+)
c1ql3a c1ql3 coding upstream 95675 24097090 ~ 24103710 (+)
rsu1 rsu1 coding upstream 104400 24058724 ~ 24094985 (+)
LOC110535521 mmp16 coding downstream 95719 24295489 ~ 24367062 (+)
LOC110535524 LOC106578570 coding downstream 298184 24497954 ~ 24532037 (+)
cngb3.1 LOC106578566 coding downstream 333309 24533079 ~ 24566994 (+)
rmdn1 rmdn1 coding downstream 391353 24591123 ~ 24599218 (+)
LOC118937338 NA coding downstream 532600 24732370 ~ 24746682 (+)
G957417 NA non-coding upstream 43376 24155742 ~ 24156009 (+)
G957415 NA non-coding upstream 46054 24153071 ~ 24153331 (+)
G957414 NA non-coding upstream 47102 24151974 ~ 24152283 (+)
G957407 NA non-coding upstream 57701 24141445 ~ 24141684 (+)
G957406 NA non-coding upstream 58079 24140823 ~ 24141306 (+)
G957432 NA non-coding downstream 4015 24203785 ~ 24203992 (+)
G957452 NA non-coding downstream 32968 24232738 ~ 24232993 (+)
G957738 NA non-coding downstream 71418 24271188 ~ 24271403 (+)
G957740 NA non-coding downstream 72800 24272570 ~ 24327075 (+)
G957748 NA non-coding downstream 85738 24285508 ~ 24288498 (+)
G956797 NA other upstream 422540 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 533455 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1458138 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4430032 19740565 ~ 19799150 (+)
G951511 NA other upstream 5072300 19126665 ~ 19127085 (+)
G957942 NA other downstream 400701 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 594830 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2513855 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2728906 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 3209232 27409002 ~ 27412913 (+)

Expression


Co-expression Network