XLOC_028681 (caprin2)


Basic Information

Item Value
gene id XLOC_028681
gene name caprin2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16615026 ~ 16628802 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055602
CTTTTCCTAGGGCATAAATAGGTGAGAGGATGCTACGGTCTGTCCTCTCTGTTTAACCACCGCTTTATGTCGTCTGTCCAGCAGCTCACCGAAAGGCTAACTCATTTGCGTTGGCTCTAAATGAGCAGCCTTCCCACCCAAGTCATCCTAGCGATCTGAAAcgcagcaaacaaacacacacactccagcagaGACGCATGAGAAAGACTGAAACCATGGTTCAGCTATCACCATCTCGGACATTAGAGACGTTGACGCCCTCGGAACTCACTGTGGAGAAGGATGATGGCCAGGGCAGCCCAAAACCTGAATCCCCTCGAATGCTTTCCGCCCTCCAGCTAGCCCTGAGCTCTACAACCGTCTACTGTGGCTATGAGAAGTACATTGAGGACGGCCTCATTTGCCTCAAGCACAAGATTCGTAACATTGAGAAAAAGAAGCTCAAACTGGAAAGATACAGTGATAAGCTGAAGAAGGGGGAAAAGCTGAATGAAGACCAACTGGAAGCTGTGGGCAAGTACGATGAGGTGGTCCATAATCTGAAGTTTGCCAAAGAGCTCCAGAAGACCATCGGCTCCCTCACTCAAGATTTGCTGAAGGCTCAGCGTAAAGCCGTTCGCCAAGAGAAGCAAATGAAGACTGATGAGGAGAAGAGCCGTTTGAGTCTAATGCTCCAGGTGCAGTACGTCCTCCATAGTCTGCAGAGAGAGGACGTCCGGAAGAACTTCTGCAACACCAGACAATATTCCTGCTACATGTCCACTCAAGACATGGAGGGTTTGATGGATTTGGCATCACTGGTGGGATGTAAAAGGGATTACAGCATTAGTTTGGAGGATCAGATGCGACGGGCTGCTATTGTTTACTGGGAGCTGCTGGAAGGGAATGAAAAACCGGTTGCTGGCTCGACATACAAGCACATGAAGGAGAAGCTTCTTCGCCTAGTGGATTCTGGCTTTTTCGATAACATCCCGCTTCCTAAATCTGACAGTCAAGAGAAGACCGAAACCATAAAGCCTGATTCTCAATCCAGACCCAGTGGCCTCACCACGCTGGTAAAGCTGAGCTCAAATGAAGTGCCTTCCAAAGAGTTTCTTAACAGACGATACATGCCTGAAACTGATGAGCGCAGACGAGGTGAAACCGCATCGCCTCGCAACTGGAAGGAAGACTTTTTGGCCATGAAGGAGAGGGAGCCACCGGACTCCTGGGAAATGGAGGAGCTTGCTGATCCTCCTGCGTCCTCCCAGTCCCCCATACAGAAGCCATGGAAAGGAGCAGCGGGTTTGATTCCTAAAACTGTAGACATTGTGAAGAGATCCACGACTGACCCTAAAGAGAAACGTCAAAGAAAGAAGGCTGAGCAAGACTCCAAATCTATGCCCGTTGCAGTGGAAGTCTTCAGTTCTCCATCTCCGTTACCAAAAGATCCCGTTCAGCGCCGGCAGCAGCTGGAGACACTGATGGACCAGATCTCTGGCTCCTTCAGTTTCATGCAGGAGTCTCTTTTGGATGGAGAATCTTCACCTGTCAACACTCAAACAAAAAGATGCCGTCCATCTCCAGGCTCCTCCACTCCAATCGtACAGAGAGAATTGACCAAAAGCCCTTCAGATATTCTGCCTTCATCGCAGCGGaGCACTCCTTTGCGGATTCTGCTGTCTGGAGAGGGTAAAGGCTGTCTGTCCAATGGAGATCGCTCCATAAATGGCTCTGATCTGGAGCTGCACTCTGAAGATAAGCCACGGAAGCAGGCTGAGGGCTTCAACTCACCTCCACTGTACCGCAGAGGATCCTCCATTTCAGTTTCTCTAGAAAACCAAAGCACTGTACAGGCAGGAAGGCAGATGTTATGCAATGGAGTATCGAGCTCTGGTTCTGCACAGACATTTTCAACCCCACCCAGTCGCAGATCCATCAGCGCAGAAAACCCCTTCCACAACATTCACTCTGTGTTTAATGTGATCGGCGAGAGCTCAGGGATGAAGGCAGATGAGAGCGGTTTCTCGGAGTCCATACATcgcagtttcacgtcagccaaaACCTCCAGTGTAACCACTGCCAGCACTCAGACTCCACCTGAACTTAACCCACCCGAGGAAGACCTGCAGATCGAAGGCCAGTATCCTCTGGAGTGTGCAGTCAGTGCTGGTGGTCCCGTGTTCTCCAGCTCCCATTCTCGTGTGGGTCAGTCGTGTTACTCTCGCGGGGCAGTCAGAGGTGGTTATGATGCCTACAGAGTGAATGTACGTTCCCCAGGAGGAAGCTTCATGTCCCAGACACACAGAGAGCCTGCGTCTGCACTTTACATGGCCAGAGAAAACGGCTATCAGCAAAACTTCAAGAGAGGAGCAGGCACAGCAACTCAGAGGAGCAGCGCCGGCTGGAGCGACTCTTCTCAAGTGAGCAGTCCGGATCGAGATGGGGCGTATCCTCTGGATTCAGGACTTAGTGACACCCTGTCTATCCCGGCCATGGAGGTGCCCATGAATCCACAAGGCCCGCACACCCTGATGCCTGTCCATGTGTACCCACTCACCCAGCTCCGTGTGGCATTCTCTGCTGCTCGCACCGCCAACTTTGCGCCGGGCACTTTAGACCAGCCCATCGCCTTTGATCTGCTCCACACCAACCTGGGTGACATGTTCGACACTGGCTCTGGTCGCTTCACCTGCCCAGCCACCGGTGCCTACGTCTTCATCTTCCACATCCTGAAGCTGGCCATCAGCGTGCCGCTCTACATCAACCTCATGCGCAACGAAGAGGTGATGGTGTCCGCGTATGCCAACGACGGTGCCCCAGATCACGAAACGGCCAGTAATCATGCTGTCCTGCAGCTGTTTCAAGGCGATCAGGTGTGGCTCAGGCTGCACCGTGGCGCCATCTATGGCAGCAGCTGGAAGTATAGCACCTTCTCTGGATTCCTGCTGTACCAGGATTGAAGCTCCTAAAATAGGCACAACAAGAGAGGATAAGGCATTTTGGGATGTTTTTTGGGAGTTGTTCTGCACTTTTGGTTACGCATGGTGCAAATGCATGTTTAAAGATCGCGTTCAATAGTGGAAGTCAGTGTTTAACGCATATAAATGCTGCTTACCGTTTAAATcaggttgttattattattattattattattattattattattatttagttctttttataagtttctttttccCTGTAGTTTGAGTTTGCACACGTAACCCAAAGAAGCCTATTTAGTGTATGCTAAACTGAAATGCTAACATTCAGAAGCATCTTCAAGTGTTCATTAATTGACCCCATCTGCTCATTTTTAGATTGGGTTTCCAGCCATATAAAGTTCTATGTAACGTGCCTTTTTTCCTGGGGGTGGGTGGGTTGAGGTCTCGAACTCAAGCACTGCTTAGCAAGAATTGAGGATCTTTCTTTTCTGGTAATACTTGACCTGTTGAGCACTTTAAAAAGAAACTGAGGTATTTGGTGGCCTTGTTATgggtttgggtgtgtgtgtgttcatctttGTGTGTCTGTGAAATCTATACTGTGAGTGAGAAATCTTGAACACTGACTCTGCTGTGAAAGCATTAAGGCCAAAATTTGCTCCCTCTTGTgcctgaaataataataaaaaaagtgcaGTTGA
>TCONS_00055603
TCTTTTCCTAGGGCATAAATAGGTGAGAGGATGCTACGGTCTGTCCTCTCTGTTTAACCACCGCTTTATGTCGTCTGTCCAGCAGCTCACCGAAAGGCTAACTCATTTGCGTTGGCTCTAAATGAGCAGCCTTCCCACCCAAGTCATCCTAGCGATCTGAAAcgcagcaaacaaacacacacactccagcagaGACGCATGAGAAAGACTGAAACCATGGTTCAGCTATCACCATCTCGGACATTAGAGACGTTGACGCCCTCGGAACTCACTGTGGAGAAGGATGATGGCCAGGGCAGCCCAAAACCTGAATCCCCTCGAATGCTTTCCGCCCTCCAGCTAGCCCTGAGCTCTACAACCGTCTACTGTGGCTATGAGAAGTACATTGAGGACGGCCTCATTTGCCTCAAGCACAAGATTCGTAACATTGAGAAAAAGAAGCTCAAACTGGAAAGATACAGTGATAAGCTGAAGAAGGGGGAAAAAGTGAATGTACGTTCCCCAGGAGGAAGCTTCATGTCCCAGACACACAGAGAGCCTGCGTCTGCACTTTACATGGCCAGAGAAAACGGCTATCAGCAAAACTTCAAGAGAGGAGCAGGCACAGCAACTCAGAGGAGCAGCGCCGGCTGGAGCGACTCTTCTCAAGTGAGCAGTCCGGATCGAGATGGGGCGTATCCTCTGGATTCAGGACTTAGTGACACCCTGTCTATCCCGGCCATGGAGGTGCCCATGAATCCACAAGGCCCGCACACCCTGATGCCTGTCCATGTGTACCCACTCACCCAGCTCCGTGTGGCATTCTCTGCTGCTCGCACCGCCAACTTTGCGCCGGGCACTTTAGACCAGCCCATCGCCTTTGATCTGCTCCACACCAACCTGGGTGACATGTTCGACACTGGCTCTGGTCGCTTCACCTGCCCAGCCACCGGTGCCTACGTCTTCATCTTCCACATCCTGAAGCTGGCCATCAGCGTGCCGCTCTACATCAACCTCATGCGCAACGAAGAGGTGATGGTGTCCGCGTATGCCAACGACGGTGCCCCAGATCACGAAACGGCCAGTAATCATGCTGTCCTGCAGCTGTTTCAAGGCGATCAGGTGTGGCTCAGGCTGCACCGTGGCGCCATCTATGGCAGCAGCTGGAAGTATAGCACCTTCTCTGGATTCCTGCTGTACCAGGATTGAAGCTCCTAAAATAGGCACAACAAGAGAGGATAAGGCATTTTGGGATGTTTTTTGGGAGTTGTTCTGCACTTTTGGTTACGCATGGTGCAAATGCATGTTTAAAGATCGCGTTCAATAGTGGAAGTCAGTGTTTAACGCATATAAATGCTGCTTACCGTTTAAATcaggttgttattattattattattattattattattattattatttagttctttttataagtttctttttccCTGTAGTTTGAGTTTGCACACGTAACCCAAAGAAGCCTATTTAGTGTATGCTAAACTGAAATGCTAACATTCAGAAGCATCTTCAAGTGTTCATTAATTGACCCCATCTGCTCATTTTTAGATTGGGTTTCCAGCCATATAAAGTTCTATGTAACGTGCCTTTTTTCCTGGGGGTGGGTGGGTTGAGGTCTCGAACTCAAGCACTGCTTAGCAAGAATTGAGGATCTTTCTTTTCTGGTAATACTTGACCTGTTGAGCACTTTAAAAAGAAACTGAGGTATTTGGTGGCCTTGTTATgggtttgggtgtgtgtgtgttcatctttGTGTGTCTGTGAAATCTATACTGTGAGTGAGAAATCTTGAACACTGACTCTGCTGTGAAAGCATTAAGGCCAAAATTTGCTCCCTCTTGTgcctgaaataataataaaaaaagtgcaGTTG

Function

symbol description
caprin2 Predicted to enable RNA binding activity and metal ion binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification and positive regulation of canonical Wnt signaling pathway. Acts upstream of or within dorsal/ventral pattern formation and positive regulation of Wnt signaling pathway. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human CAPRIN2 (caprin family member 2).

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0017148 negative regulation of translation biological_process
GO:0061003 positive regulation of dendritic spine morphogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0040008 regulation of growth biological_process
GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040812-2 Predicted to enable RNA binding activity and metal ion binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification and positive regulation of canonical Wnt signaling pathway. Acts upstream of or within dorsal/ventral pattern formation and positive regulation of Wnt signaling pathway. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human CAPRIN2 (caprin family member 2).

Ensembl:

ensembl_id ENSDARG00000020749

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055602 False 3625 mRNA 0.49 21 16615026 16628801
TCONS_00055603 True 1870 mRNA 0.48 6 16615027 16628802
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_028680 btg1 coding downstream 69941 16536173 ~ 16545085 (-)
XLOC_028679 wu:fc23c09 coding downstream 163651 16447485 ~ 16451375 (-)
XLOC_028678 dcn coding downstream 171973 16368762 ~ 16443053 (-)
XLOC_028677 lum coding downstream 260734 16349042 ~ 16354292 (-)
XLOC_028676 kera coding downstream 269799 16337156 ~ 16345227 (-)
XLOC_028682 sinhcaf coding upstream 2681 16631483 ~ 16644708 (-)
XLOC_028683 dennd5b coding upstream 20740 16649542 ~ 16706978 (-)
XLOC_028684 NA coding upstream 134903 16763705 ~ 16824556 (-)
XLOC_028685 ldhba coding upstream 199950 16828752 ~ 16836006 (-)
XLOC_028686 slc25a3a coding upstream 216171 16844973 ~ 16853474 (-)
XLOC_028673 NA non-coding downstream 301082 16295524 ~ 16313944 (-)
XLOC_028674 NA non-coding downstream 313784 16299656 ~ 16301242 (-)
XLOC_028672 BX649423.3 non-coding downstream 401486 16213424 ~ 16213540 (-)
XLOC_028671 NA non-coding downstream 422843 16127673 ~ 16192183 (-)
XLOC_028669 NA non-coding downstream 539525 16041555 ~ 16075501 (-)
XLOC_028690 NA non-coding upstream 484577 17113379 ~ 17216223 (-)
XLOC_028696 NA non-coding upstream 942493 17571295 ~ 17629444 (-)
XLOC_028702 BX890572.1 non-coding upstream 1107641 17736443 ~ 17737812 (-)
XLOC_028707 NA non-coding upstream 1246269 17875071 ~ 17882930 (-)

Expression

Expression of XLOC_028681(caprin2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Expression of XLOC_028681(caprin2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network