XLOC_028681 (caprin2)


Basic Information

Item Value
gene id XLOC_028681
gene name caprin2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16615026 ~ 16628802 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055602
CTTTTCCTAGGGCATAAATAGGTGAGAGGATGCTACGGTCTGTCCTCTCTGTTTAACCACCGCTTTATGTCGTCTGTCCAGCAGCTCACCGAAAGGCTAACTCATTTGCGTTGGCTCTAAATGAGCAGCCTTCCCACCCAAGTCATCCTAGCGATCTGAAAcgcagcaaacaaacacacacactccagcagaGACGCATGAGAAAGACTGAAACCATGGTTCAGCTATCACCATCTCGGACATTAGAGACGTTGACGCCCTCGGAACTCACTGTGGAGAAGGATGATGGCCAGGGCAGCCCAAAACCTGAATCCCCTCGAATGCTTTCCGCCCTCCAGCTAGCCCTGAGCTCTACAACCGTCTACTGTGGCTATGAGAAGTACATTGAGGACGGCCTCATTTGCCTCAAGCACAAGATTCGTAACATTGAGAAAAAGAAGCTCAAACTGGAAAGATACAGTGATAAGCTGAAGAAGGGGGAAAAGCTGAATGAAGACCAACTGGAAGCTGTGGGCAAGTACGATGAGGTGGTCCATAATCTGAAGTTTGCCAAAGAGCTCCAGAAGACCATCGGCTCCCTCACTCAAGATTTGCTGAAGGCTCAGCGTAAAGCCGTTCGCCAAGAGAAGCAAATGAAGACTGATGAGGAGAAGAGCCGTTTGAGTCTAATGCTCCAGGTGCAGTACGTCCTCCATAGTCTGCAGAGAGAGGACGTCCGGAAGAACTTCTGCAACACCAGACAATATTCCTGCTACATGTCCACTCAAGACATGGAGGGTTTGATGGATTTGGCATCACTGGTGGGATGTAAAAGGGATTACAGCATTAGTTTGGAGGATCAGATGCGACGGGCTGCTATTGTTTACTGGGAGCTGCTGGAAGGGAATGAAAAACCGGTTGCTGGCTCGACATACAAGCACATGAAGGAGAAGCTTCTTCGCCTAGTGGATTCTGGCTTTTTCGATAACATCCCGCTTCCTAAATCTGACAGTCAAGAGAAGACCGAAACCATAAAGCCTGATTCTCAATCCAGACCCAGTGGCCTCACCACGCTGGTAAAGCTGAGCTCAAATGAAGTGCCTTCCAAAGAGTTTCTTAACAGACGATACATGCCTGAAACTGATGAGCGCAGACGAGGTGAAACCGCATCGCCTCGCAACTGGAAGGAAGACTTTTTGGCCATGAAGGAGAGGGAGCCACCGGACTCCTGGGAAATGGAGGAGCTTGCTGATCCTCCTGCGTCCTCCCAGTCCCCCATACAGAAGCCATGGAAAGGAGCAGCGGGTTTGATTCCTAAAACTGTAGACATTGTGAAGAGATCCACGACTGACCCTAAAGAGAAACGTCAAAGAAAGAAGGCTGAGCAAGACTCCAAATCTATGCCCGTTGCAGTGGAAGTCTTCAGTTCTCCATCTCCGTTACCAAAAGATCCCGTTCAGCGCCGGCAGCAGCTGGAGACACTGATGGACCAGATCTCTGGCTCCTTCAGTTTCATGCAGGAGTCTCTTTTGGATGGAGAATCTTCACCTGTCAACACTCAAACAAAAAGATGCCGTCCATCTCCAGGCTCCTCCACTCCAATCGtACAGAGAGAATTGACCAAAAGCCCTTCAGATATTCTGCCTTCATCGCAGCGGaGCACTCCTTTGCGGATTCTGCTGTCTGGAGAGGGTAAAGGCTGTCTGTCCAATGGAGATCGCTCCATAAATGGCTCTGATCTGGAGCTGCACTCTGAAGATAAGCCACGGAAGCAGGCTGAGGGCTTCAACTCACCTCCACTGTACCGCAGAGGATCCTCCATTTCAGTTTCTCTAGAAAACCAAAGCACTGTACAGGCAGGAAGGCAGATGTTATGCAATGGAGTATCGAGCTCTGGTTCTGCACAGACATTTTCAACCCCACCCAGTCGCAGATCCATCAGCGCAGAAAACCCCTTCCACAACATTCACTCTGTGTTTAATGTGATCGGCGAGAGCTCAGGGATGAAGGCAGATGAGAGCGGTTTCTCGGAGTCCATACATcgcagtttcacgtcagccaaaACCTCCAGTGTAACCACTGCCAGCACTCAGACTCCACCTGAACTTAACCCACCCGAGGAAGACCTGCAGATCGAAGGCCAGTATCCTCTGGAGTGTGCAGTCAGTGCTGGTGGTCCCGTGTTCTCCAGCTCCCATTCTCGTGTGGGTCAGTCGTGTTACTCTCGCGGGGCAGTCAGAGGTGGTTATGATGCCTACAGAGTGAATGTACGTTCCCCAGGAGGAAGCTTCATGTCCCAGACACACAGAGAGCCTGCGTCTGCACTTTACATGGCCAGAGAAAACGGCTATCAGCAAAACTTCAAGAGAGGAGCAGGCACAGCAACTCAGAGGAGCAGCGCCGGCTGGAGCGACTCTTCTCAAGTGAGCAGTCCGGATCGAGATGGGGCGTATCCTCTGGATTCAGGACTTAGTGACACCCTGTCTATCCCGGCCATGGAGGTGCCCATGAATCCACAAGGCCCGCACACCCTGATGCCTGTCCATGTGTACCCACTCACCCAGCTCCGTGTGGCATTCTCTGCTGCTCGCACCGCCAACTTTGCGCCGGGCACTTTAGACCAGCCCATCGCCTTTGATCTGCTCCACACCAACCTGGGTGACATGTTCGACACTGGCTCTGGTCGCTTCACCTGCCCAGCCACCGGTGCCTACGTCTTCATCTTCCACATCCTGAAGCTGGCCATCAGCGTGCCGCTCTACATCAACCTCATGCGCAACGAAGAGGTGATGGTGTCCGCGTATGCCAACGACGGTGCCCCAGATCACGAAACGGCCAGTAATCATGCTGTCCTGCAGCTGTTTCAAGGCGATCAGGTGTGGCTCAGGCTGCACCGTGGCGCCATCTATGGCAGCAGCTGGAAGTATAGCACCTTCTCTGGATTCCTGCTGTACCAGGATTGAAGCTCCTAAAATAGGCACAACAAGAGAGGATAAGGCATTTTGGGATGTTTTTTGGGAGTTGTTCTGCACTTTTGGTTACGCATGGTGCAAATGCATGTTTAAAGATCGCGTTCAATAGTGGAAGTCAGTGTTTAACGCATATAAATGCTGCTTACCGTTTAAATcaggttgttattattattattattattattattattattattatttagttctttttataagtttctttttccCTGTAGTTTGAGTTTGCACACGTAACCCAAAGAAGCCTATTTAGTGTATGCTAAACTGAAATGCTAACATTCAGAAGCATCTTCAAGTGTTCATTAATTGACCCCATCTGCTCATTTTTAGATTGGGTTTCCAGCCATATAAAGTTCTATGTAACGTGCCTTTTTTCCTGGGGGTGGGTGGGTTGAGGTCTCGAACTCAAGCACTGCTTAGCAAGAATTGAGGATCTTTCTTTTCTGGTAATACTTGACCTGTTGAGCACTTTAAAAAGAAACTGAGGTATTTGGTGGCCTTGTTATgggtttgggtgtgtgtgtgttcatctttGTGTGTCTGTGAAATCTATACTGTGAGTGAGAAATCTTGAACACTGACTCTGCTGTGAAAGCATTAAGGCCAAAATTTGCTCCCTCTTGTgcctgaaataataataaaaaaagtgcaGTTGA
>TCONS_00055603
TCTTTTCCTAGGGCATAAATAGGTGAGAGGATGCTACGGTCTGTCCTCTCTGTTTAACCACCGCTTTATGTCGTCTGTCCAGCAGCTCACCGAAAGGCTAACTCATTTGCGTTGGCTCTAAATGAGCAGCCTTCCCACCCAAGTCATCCTAGCGATCTGAAAcgcagcaaacaaacacacacactccagcagaGACGCATGAGAAAGACTGAAACCATGGTTCAGCTATCACCATCTCGGACATTAGAGACGTTGACGCCCTCGGAACTCACTGTGGAGAAGGATGATGGCCAGGGCAGCCCAAAACCTGAATCCCCTCGAATGCTTTCCGCCCTCCAGCTAGCCCTGAGCTCTACAACCGTCTACTGTGGCTATGAGAAGTACATTGAGGACGGCCTCATTTGCCTCAAGCACAAGATTCGTAACATTGAGAAAAAGAAGCTCAAACTGGAAAGATACAGTGATAAGCTGAAGAAGGGGGAAAAAGTGAATGTACGTTCCCCAGGAGGAAGCTTCATGTCCCAGACACACAGAGAGCCTGCGTCTGCACTTTACATGGCCAGAGAAAACGGCTATCAGCAAAACTTCAAGAGAGGAGCAGGCACAGCAACTCAGAGGAGCAGCGCCGGCTGGAGCGACTCTTCTCAAGTGAGCAGTCCGGATCGAGATGGGGCGTATCCTCTGGATTCAGGACTTAGTGACACCCTGTCTATCCCGGCCATGGAGGTGCCCATGAATCCACAAGGCCCGCACACCCTGATGCCTGTCCATGTGTACCCACTCACCCAGCTCCGTGTGGCATTCTCTGCTGCTCGCACCGCCAACTTTGCGCCGGGCACTTTAGACCAGCCCATCGCCTTTGATCTGCTCCACACCAACCTGGGTGACATGTTCGACACTGGCTCTGGTCGCTTCACCTGCCCAGCCACCGGTGCCTACGTCTTCATCTTCCACATCCTGAAGCTGGCCATCAGCGTGCCGCTCTACATCAACCTCATGCGCAACGAAGAGGTGATGGTGTCCGCGTATGCCAACGACGGTGCCCCAGATCACGAAACGGCCAGTAATCATGCTGTCCTGCAGCTGTTTCAAGGCGATCAGGTGTGGCTCAGGCTGCACCGTGGCGCCATCTATGGCAGCAGCTGGAAGTATAGCACCTTCTCTGGATTCCTGCTGTACCAGGATTGAAGCTCCTAAAATAGGCACAACAAGAGAGGATAAGGCATTTTGGGATGTTTTTTGGGAGTTGTTCTGCACTTTTGGTTACGCATGGTGCAAATGCATGTTTAAAGATCGCGTTCAATAGTGGAAGTCAGTGTTTAACGCATATAAATGCTGCTTACCGTTTAAATcaggttgttattattattattattattattattattattattatttagttctttttataagtttctttttccCTGTAGTTTGAGTTTGCACACGTAACCCAAAGAAGCCTATTTAGTGTATGCTAAACTGAAATGCTAACATTCAGAAGCATCTTCAAGTGTTCATTAATTGACCCCATCTGCTCATTTTTAGATTGGGTTTCCAGCCATATAAAGTTCTATGTAACGTGCCTTTTTTCCTGGGGGTGGGTGGGTTGAGGTCTCGAACTCAAGCACTGCTTAGCAAGAATTGAGGATCTTTCTTTTCTGGTAATACTTGACCTGTTGAGCACTTTAAAAAGAAACTGAGGTATTTGGTGGCCTTGTTATgggtttgggtgtgtgtgtgttcatctttGTGTGTCTGTGAAATCTATACTGTGAGTGAGAAATCTTGAACACTGACTCTGCTGTGAAAGCATTAAGGCCAAAATTTGCTCCCTCTTGTgcctgaaataataataaaaaaagtgcaGTTG

Function

symbol description
caprin2 Predicted to enable RNA binding activity and metal ion binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification and positive regulation of canonical Wnt signaling pathway. Acts upstream of or within dorsal/ventral pattern formation and positive regulation of Wnt signaling pathway. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human CAPRIN2 (caprin family member 2).

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0017148 negative regulation of translation biological_process
GO:0061003 positive regulation of dendritic spine morphogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0040008 regulation of growth biological_process
GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040812-2 Predicted to enable RNA binding activity and metal ion binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification and positive regulation of canonical Wnt signaling pathway. Acts upstream of or within dorsal/ventral pattern formation and positive regulation of Wnt signaling pathway. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human CAPRIN2 (caprin family member 2).

Ensembl:

ensembl_id ENSDARG00000020749

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055602 False 3625 mRNA 0.49 21 16615026 16628801
TCONS_00055603 True 1870 mRNA 0.48 6 16615027 16628802

Neighbor

gene id symbol gene type direction distance location
XLOC_028680 btg1 coding downstream 69941 16536173 ~ 16545085 (-)
XLOC_028679 wu:fc23c09 coding downstream 163651 16447485 ~ 16451375 (-)
XLOC_028678 dcn coding downstream 171973 16368762 ~ 16443053 (-)
XLOC_028677 lum coding downstream 260734 16349042 ~ 16354292 (-)
XLOC_028676 kera coding downstream 269799 16337156 ~ 16345227 (-)
XLOC_028682 sinhcaf coding upstream 2681 16631483 ~ 16644708 (-)
XLOC_028683 dennd5b coding upstream 20740 16649542 ~ 16706978 (-)
XLOC_028684 NA coding upstream 134903 16763705 ~ 16824556 (-)
XLOC_028685 ldhba coding upstream 199950 16828752 ~ 16836006 (-)
XLOC_028686 slc25a3a coding upstream 216171 16844973 ~ 16853474 (-)
XLOC_028673 NA non-coding downstream 301082 16295524 ~ 16313944 (-)
XLOC_028674 NA non-coding downstream 313784 16299656 ~ 16301242 (-)
XLOC_028672 BX649423.3 non-coding downstream 401486 16213424 ~ 16213540 (-)
XLOC_028671 NA non-coding downstream 422843 16127673 ~ 16192183 (-)
XLOC_028669 NA non-coding downstream 539525 16041555 ~ 16075501 (-)
XLOC_028690 NA non-coding upstream 484577 17113379 ~ 17216223 (-)
XLOC_028696 NA non-coding upstream 942493 17571295 ~ 17629444 (-)
XLOC_028702 BX890572.1 non-coding upstream 1107641 17736443 ~ 17737812 (-)
XLOC_028707 NA non-coding upstream 1246269 17875071 ~ 17882930 (-)

Expression


Co-expression Network