G958080


Basic Information

Item Value
gene id G958080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24686057 ~ 24686281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1092275
gaagcgtcctctcactgtcaactgtgtttatttcaGCAAATGTAACATGCGTAAATATTTGTAttaacataagattcaacaactgagacataaacaggacaagttccacagacatgtgactaacagaaatggaataatgtgtccctgaacaaaggggagggggggtcaaaatcaaaagtaacagtcagtaactggTAACCAGCTACATTAAGTAATGCAGTgttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1092275 True 225 lncRNA 0.38 1 24686057 24686281

Neighbor

gene id symbol gene type direction distance location
rmdn1 rmdn1 coding upstream 86839 24591123 ~ 24599218 (+)
cngb3.1 LOC106578566 coding upstream 119063 24533079 ~ 24566994 (+)
LOC110535524 LOC106578570 coding upstream 154020 24497954 ~ 24532037 (+)
LOC110535521 mmp16 coding upstream 318995 24295489 ~ 24367062 (+)
steap2 steap2 coding upstream 487546 24189141 ~ 24198511 (+)
LOC118937338 NA coding downstream 46089 24732370 ~ 24746682 (+)
LOC110535530 LOC106578529 coding downstream 110965 24797246 ~ 24827022 (+)
pfkpa LOC106578535 coding downstream 508172 25194453 ~ 25222665 (+)
fzd8a LOC106578536 coding downstream 1041780 25728061 ~ 25730806 (+)
LOC110536590 cul2 coding downstream 1148692 25834973 ~ 25856195 (+)
G958008 NA non-coding upstream 140068 24545720 ~ 24545989 (+)
G958007 NA non-coding upstream 140753 24545036 ~ 24545304 (+)
G958002 NA non-coding upstream 146732 24539096 ~ 24539325 (+)
G957964 NA non-coding upstream 217392 24468210 ~ 24468665 (+)
G957920 NA non-coding upstream 263358 24422416 ~ 24422699 (+)
G958081 LOC106573797 non-coding downstream 356 24686637 ~ 24687109 (+)
G958304 NA non-coding downstream 70872 24757153 ~ 24757640 (+)
G958345 NA non-coding downstream 165274 24851555 ~ 24851762 (+)
G958347 NA non-coding downstream 166951 24853232 ~ 24853618 (+)
G958350 NA non-coding downstream 172580 24858861 ~ 24859069 (+)
G957942 NA other upstream 84404 24600471 ~ 24601653 (+)
G956797 NA other upstream 909212 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 1020127 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1944810 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4916704 19740565 ~ 19799150 (+)
G958300 idi1 other downstream 108319 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2027344 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2242395 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 2722721 27409002 ~ 27412913 (+)
mtpap LOC106578552 other downstream 3076707 27739381 ~ 27765414 (+)

Expression


Co-expression Network