G958270


Basic Information

Item Value
gene id G958270
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24707190 ~ 24750876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1092478
ctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttatttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccaacttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgttgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacaccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatagacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtggatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttggggaatctttttgtatccaaatccagctttaaacttcttcacaacagtatctcggacctgcctggtgtgttctttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacccaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaagggtctgaataattttgcacgcccaatttttcagttttgatttgttacaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaatacagttctatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtaggtaatgAATGTGTAGAAAGGAATCTTACAGACTTTGCGTCGCAGCAGAAAGATC

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1092478 True 1345 lncRNA 0.42 2 24707190 24750876

Neighbor

gene id symbol gene type direction distance location
LOC110535527 wwp1 coding downstream 44980 24603989 ~ 24662210 (-)
cpne3 cpne3 coding downstream 116410 24567201 ~ 24590780 (-)
cnbd1 cnbd1 coding downstream 215252 24432170 ~ 24491938 (-)
LOC118937336 NA coding downstream 534123 24169763 ~ 24173067 (-)
vim vim coding downstream 730970 23967601 ~ 23976220 (-)
snx16 LOC106578530 coding upstream 24526 24775402 ~ 24793742 (-)
idi1 idi1 coding upstream 43708 24794584 ~ 24797430 (-)
adarb2 adarb2 coding upstream 82952 24833828 ~ 25027448 (-)
klf6a LOC100196412 coding upstream 577232 25328108 ~ 25335803 (-)
LOC110535538 LOC106578537 coding upstream 989031 25739907 ~ 25743969 (-)
G958253 NA non-coding downstream 10325 24690283 ~ 24696865 (-)
G958202 LOC106578566 non-coding downstream 153873 24546880 ~ 24553317 (-)
G958201 NA non-coding downstream 160728 24546257 ~ 24546462 (-)
G958200 NA non-coding downstream 162293 24544654 ~ 24544897 (-)
G958509 NA non-coding upstream 75142 24826018 ~ 24848289 (-)
G958519 NA non-coding upstream 97620 24848496 ~ 24848705 (-)
G958528 NA non-coding upstream 116151 24867027 ~ 24867256 (-)
G958548 NA non-coding upstream 146441 24897317 ~ 24899909 (-)
G958565 NA non-coding upstream 166143 24917019 ~ 24917310 (-)
G958210 LOC106578566 other downstream 140208 24556819 ~ 24566982 (-)
G958191 NA other downstream 173646 24533004 ~ 24533544 (-)
G958140 NA other downstream 253071 24453648 ~ 24454119 (-)
G957684 NA other downstream 463881 24242722 ~ 24243309 (-)
G957157 LOC106578515 other downstream 959106 23746480 ~ 23748084 (-)
G958946 NA other upstream 428508 25179384 ~ 25179713 (-)
G959058 NA other upstream 622969 25373845 ~ 25374298 (-)
LOC110535540 LOC106578540 other upstream 1067901 25818677 ~ 25833045 (-)
G960344 LOC106578541 other upstream 1647330 26357045 ~ 26401551 (-)
G961041 LOC107713907 other upstream 1986298 26737174 ~ 26802826 (-)

Expression


Co-expression Network