G958363 (adarb2)


Basic Information

Item Value
gene id G958363
gene name adarb2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24891281 ~ 24891985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1092583
CGGTGGGGATGGTAACAGGGACCCCTGCCAGCCGCTGCTTGGCCTGCACCATTAGGTCCAACGTGTGGCGAAGTAATCGGCCGTGTCGGAGGGCGCTGGAGAGGCGCAGCTCGCTCTTCTCCGACGCCGACCGGTAGAGGGAGAAGCTGTCGCCGACTACACCACCACATGACGACGGCTCAAACTCCTTGAACAGAGTGTCTGGGAAGTCTGCCGCCTGGTCCGAGGTAAAGTCTGCAGAGGGGTTGCCATGGTTACCCATGGCCAGGTGAGCCTGAGGAGCGTTGGGGAACTGAATGAAGGACTTGAGGGCCAGCTCGGCCGCCCTCATCTTAGCTTTCTTCTTGGTGGGGCCCGTGCCCTCAAAGGTGAGGCCATTCACCTCTACGGCGATTGAGAACAAGGGTGCGTGGACCGGGCCGGTCTGCGATACCATGCGGTACTGGAGGCCTGGCCTCAGCTCATTCAGCTGCACCAGGGCATTCTTTGGTGAGTCCGACCACAACAGTTTCTTGTAGATCAGACGGAGTTTGCACAGGTGTCCGTTATTGTCCTCCTCCAACGGCCGCTTCCTCTTCAGACCGGAAGTCCCACCTCTAGATGTGTCCGATCTGAACAGTGATTGGCGGTCGCCGGGGACAATAGAACAGCAGTCCTCTAGGTTACCAATATTTCGGTTCTCTTTGACCTCAGTGCTACTGGTGC

Function

symbol description
adarb2 Predicted to enable double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and tRNA-specific adenosine deaminase activity. Predicted to be involved in RNA processing and adenosine to inosine editing. Predicted to be active in cytoplasm and nucleolus. Is expressed in brain and spinal cord. Orthologous to human ADARB2 (adenosine deaminase RNA specific B2 (inactive)).

NR:

description
double-stranded RNA-specific editase B2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1092583 True 705 lncRNA 0.59 1 24891281 24891985

Neighbor

gene id symbol gene type direction distance location
LOC110535530 LOC106578529 coding upstream 64259 24797246 ~ 24827022 (+)
LOC118937338 NA coding upstream 144599 24732370 ~ 24746682 (+)
rmdn1 rmdn1 coding upstream 292063 24591123 ~ 24599218 (+)
cngb3.1 LOC106578566 coding upstream 324287 24533079 ~ 24566994 (+)
LOC110535524 LOC106578570 coding upstream 359244 24497954 ~ 24532037 (+)
pfkpa LOC106578535 coding downstream 302468 25194453 ~ 25222665 (+)
fzd8a LOC106578536 coding downstream 836076 25728061 ~ 25730806 (+)
LOC110536590 cul2 coding downstream 942988 25834973 ~ 25856195 (+)
LOC110535542 LOC106578541 coding downstream 966860 25858845 ~ 26401631 (+)
LOC110536591 LOC106578544 coding downstream 1726163 26618148 ~ 26700276 (+)
G958350 NA non-coding upstream 32212 24858861 ~ 24859069 (+)
G958347 NA non-coding upstream 37663 24853232 ~ 24853618 (+)
G958345 NA non-coding upstream 39519 24851555 ~ 24851762 (+)
G958304 NA non-coding upstream 133641 24757153 ~ 24757640 (+)
G958081 LOC106573797 non-coding upstream 204172 24686637 ~ 24687109 (+)
G958381 NA non-coding downstream 25131 24917116 ~ 24917963 (+)
G958385 NA non-coding downstream 29657 24921642 ~ 24921841 (+)
G958411 NA non-coding downstream 69325 24961310 ~ 25033493 (+)
G958674 NA non-coding downstream 158476 25050461 ~ 25050699 (+)
G958733 NA non-coding downstream 246084 25138069 ~ 25138347 (+)
G958300 idi1 other upstream 95545 24794600 ~ 24795736 (+)
G957942 NA other upstream 289628 24600471 ~ 24601653 (+)
G956797 NA other upstream 1114436 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 1225351 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 2150034 22712577 ~ 22741263 (+)
G960696 LOC106583976 other downstream 1821640 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2036691 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 2517017 27409002 ~ 27412913 (+)
mtpap LOC106578552 other downstream 2871003 27739381 ~ 27765414 (+)
G961864 NA other downstream 2936761 27828746 ~ 27829177 (+)

Expression


Co-expression Network