G958849


Basic Information

Item Value
gene id G958849
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 25328200 ~ 25331253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1093099
caacaacaaaaaaatcttacaaaaatgatttttttcctttttttttttctttgacaAAGATTCTGTAAAGAACAAGGGGCGCTGTGtgtggaagaggaagagagaatcaGAGTGCATCCCAAGTGAcatgctattccctatataatgcattaaTTTTGAACaaagccctatggtccctggtctgaagtagtactctaatagggaatagagtgccatttgggatgcagacagcaATGGGAAACTGTAGGTTAAGATGCAAGCAAACATGAGGCTTAATTAAGGCTCGATTATCACCTGAAAGATATTGGCTGCTGTTCTGTTACAAAGACAGAAAGTCATTGTTCCAATTCTGTGCCACAAAAGCCTTGCTGTTGCTGGCGGTGTAATTTTATTATAGCAGGCCGTTTCAAGTTGTACTCATCCTCCCCCTTACAACAATCTGATCTAAAATCCATGTTGTGGCCCTGCTACACTGATCTTGCTGCAATGTCAAATTCCTTTCCACCCACAAAGCATGTCCCTGATACTGAATAAAATAAGTTTGTACTTTGTTATATATCAATGTTAATCTCACCAATCCTTGAGAGTAGACTTTTTTAAAATGACAAATATAACACATTAAGCTATCCTTTAACATTATTTTGGTCCCTTACCCTGCAAAAATGTCCTGAAGTCTTCAAATTATTTCAAGTGTGTACATAAACAATGAATCAGCTTCaaatggggaggggggggtagaTCTTTTTTTCCCCCGCTCTTCAGAATCCTGTTCACGTTGGTTTTGATAATAATGTAGCTGCCTGGACCAAAACAACGACTGCGGCTGCCCAGACGGGTCAATAGCAAACTCCCAGAGTCAGCAGTCCGTAATAAATTCTATGCCAGCAAAGCCTTTAGCAATTTATTACAGAGATGCAGTACAAGGCAAGGGCTGTCCAACTGGAGCTTGTTAATTACAATAAATCTTTAGGGTTTTTCCTCAGCTTTGGttgcagggggggggggtgatattgCCCTACAGTGAGTCTGGGCCCCCGAGTTCTCTACAAACCCAATGTTAGGGCATTGTTGAGAGCAGCTGCATCACCATCACATTCCCTTCAAGTCAGCCTTGTCTTTATGCAAACCACAAGTTCATGTCCTagactgcatctgaaatggcaccctgttccctttatgacgcactacttttgaccagggccctatggaccCAAAGTAGTGACCTAaagagggaatagggtacctgCCCAGATCTAGTCCAATTGTCTCATCAGGTTTTTTTTGTACCTTTGAGCAACATTGTCACTTGATACCAAATGTGTATAACTacgtagatacagtagatactacaGTGGTAGTAAATTGGGTTAATAATATAAGTGCTCTCTAAATGATGACTTGAAGTTATTTTACACAAGTCTTGGTTTGAAGCGACTGAATGTACTATATAGATCATCAGGGTGCTATGCAATATAACCTAAAAAGGGAGGATCTTTACTGTACATGCTCTAAACACAAAACACTATTCACAATCTACATAGGGCTAATAGACCTAGCAGTCTCTGAAAACAAGGAAAGGTGCAAGTAAGTTCATGTGAAATTGAGCCTTAATAAAGCTTTTCAATCACCCATACAACAATGTGACCCCCCTCGCCCCTCTCCAAGGAGTAGTCATCCACCCCACAAGGATAGGTCACTTGCATAAGGCACCATTAAGGTCGTCAACAGTGCATTACCAGGTAGAAAAGAAGATAGAATATACAAAATCAAATCCGATAGTCCTCAAGGCATCGatgagtgaaaaaaaaaaaaaaaatagcttaATGAATGAATGATTCAGTTGCTAAGTAAGCAGTAGTGGTTTCTCAAaccaaaaagagagaaagaagtactgaagtaataataattaaaaaaaaatcatcaaggCTTTATGTACAATATTGTAACATTTAACCGTTTGTATTTAGCTGCGCTTTTATTGGAATCTATTTGCAGTCCTGATTACAGAATAACAGGAAGAGAGAACAAACCCTAGAACCATGCAACACCTGTCTATGATACTGAAGTTATAGTATAGTTGTGTTATACCTCTAAGCACACAGCTTATACAATGGACTAAAAATTTGCTTTGtaacttgtaaaaaaaaaacaagctacGTAACACATTGCACATTTAGTAGCTGCACCAAACACCAAAAAAAAGCTCCTCTCACTCAGGACTCACATTGTGGAGTTTCTCCCCTGGCCTGGGTTGCTGAATGACAGTCAGGCAGGCAGTCACGTTCTCACACACCCGTACTCACAACTACAAGAAAAGAAAACTTGCTCCCTGACACCATTCAGTCCACAGCAACACTGGTACCAGACCGCCTTTGCTCCCCCCGCTTTGCACACAGGCCAGTCAACCAAGTCAGACATTCGCAGTGCACACATGCTTACCTCAGACAACCGTTTTTGTAAAGCAGTACCAGTGTATCAGTTGTCCAGGAGACAGTTGCTTCACCTCAAAAACATCATGCACCAACCACACATTCAAATCATTCATTCGTTAATaatttttttgtctttgttttagttttttttttttgtctttttcttTCAAGTCCCTCAATTCAATTGGCTgcttccttctgtctgtctgtacatgaTTTTGTCCTCTGTTGTTGTGGTTTTTGGACAGGCAACCTTCAGAGCGCCTTCTTTCTCCAAGGGGTCCATCCATCCCGGAGGCACTGGGTATGGTGCAAAATGGCATACTTTGGCTAGAACACGCTCCCCTAGCTCGCTCCTCTCAAGGGCAGTTCAACCATGAGGCTGGTTAGGAGACGACATTTCCTTTCGCTGCGTTTGTTAGTTTCACTAAACGGCTAACATCGCTCCGCTCCGACCTGCTCAGAGGTGTCTTTTCATGTGGAGGGCAAGGTGATCGGACCTGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1093099 True 2938 lncRNA 0.41 2 25328200 25331253

Neighbor

gene id symbol gene type direction distance location
pfkpa LOC106578535 coding upstream 105535 25194453 ~ 25222665 (+)
LOC110535530 LOC106578529 coding upstream 501178 24797246 ~ 24827022 (+)
LOC118937338 NA coding upstream 581518 24732370 ~ 24746682 (+)
rmdn1 rmdn1 coding upstream 728982 24591123 ~ 24599218 (+)
cngb3.1 LOC106578566 coding upstream 761206 24533079 ~ 24566994 (+)
fzd8a LOC106578536 coding downstream 396808 25728061 ~ 25730806 (+)
LOC110536590 cul2 coding downstream 503720 25834973 ~ 25856195 (+)
LOC110535542 LOC106578541 coding downstream 527592 25858845 ~ 26401631 (+)
LOC110536591 LOC106578544 coding downstream 1286895 26618148 ~ 26700276 (+)
LOC118936350 NA coding downstream 1382342 26713595 ~ 26751558 (+)
G958830 NA non-coding upstream 19989 25307604 ~ 25308211 (+)
G958733 NA non-coding upstream 189853 25138069 ~ 25138347 (+)
G958674 NA non-coding upstream 277501 25050461 ~ 25050699 (+)
G958411 NA non-coding upstream 294707 24961310 ~ 25033493 (+)
G958385 NA non-coding upstream 406359 24921642 ~ 24921841 (+)
G958851 NA non-coding downstream 4151 25335404 ~ 25335736 (+)
G959054 NA non-coding downstream 40140 25371393 ~ 25371622 (+)
G959056 NA non-coding downstream 41647 25372900 ~ 25373802 (+)
G959092 NA non-coding downstream 70550 25401803 ~ 25402031 (+)
G959150 NA non-coding downstream 119170 25450423 ~ 25450800 (+)
G958300 idi1 other upstream 532464 24794600 ~ 24795736 (+)
G957942 NA other upstream 726547 24600471 ~ 24601653 (+)
G956797 NA other upstream 1551355 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 1662270 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 2586953 22712577 ~ 22741263 (+)
G960696 LOC106583976 other downstream 1382372 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 1597423 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 2077749 27409002 ~ 27412913 (+)
mtpap LOC106578552 other downstream 2431735 27739381 ~ 27765414 (+)
G961864 NA other downstream 2497493 27828746 ~ 27829177 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) smim7 LOC106573893 misc NC_048565.1 CM023219.2 17344382 ~ 17347870 (+)
eurasian perch (Perca fluviatilis) G218368 NA non-coding NC_053133.1 CM020930.1 7763500 ~ 7766397 (-)