XLOC_028690


Basic Information

Item Value
gene id XLOC_028690
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 17113379 ~ 17216223 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057347
ATTTAAATGGTCCAGTTTTGTCACATTTGCTTTGCTCAACCGAGCACTGGCGCTAAGGTAACCACTCTTGGCTCAGAGCCTGTTGTTTAGAACACGAAACAAATTGACTTCTCCTCCCCCAAGTCTTTGCCTTTTGTAATTTTGCTTTGGCGTTGTTGTTTGTGTGTGACCAGCCCTGGGATTTCACCTCGTCCTTGAGAGACCAGCGCAAATCAACACAGATAAGACATCCCGACCCTGTTCACCTAACCCGGAGGGTCGTTTTCCTTCGAGACACGTGGACGGAGACGTACGCGACACTAGGGACCGAAGAGCTCCAGCCTCTATAGAGGGACTCAGACAGGGTGGGAGGAGATCCCAGCAGGGTTCAGCTCCTCACCAATGGGTTTATGGTCTGAAGACGAGCAGCACTCATCTCTTTCACATCCTTTGTAGGTAGAAGCAGATACAAGGACAAAACTCTTTCACAACAAGGAGCCTCGACACGACTGACTGGTATGTAAAATGTGCGTCTGAAAAAGGCCTTTACAAACGTTCTCAGTGCTTGCATTTTTAGTCTATGTCATTATTACCGACATTATGTATCCTCGTAGTCCATTTTCTTTCAGCAATCAAAGAATAGCAGTTATGTCTGTCTTGTGATTTTCTGCTGATCTGGATACAGAGCAAATGGCCATATTCATCATCAAGGATAGTTGTCAATATGTAGGTCTTTTCCAATGATGACTCTGACCTCGAAGTATTTCACTATTAAAACTAGATAAAACTATATCCTTATGAAACATATAAACACAATGCTGTTCATAACTTG
>TCONS_00055626
AATATCTATGCAGAAATAACAaattaaaggggaaaaaagatcACTGGCCTACTGCTCATGTACAGTAGCTATGAAGTGATCATTCCTCATATTCGGTCAGCTGTGTTGTGATTAGAAATGAATTGGCCTAAGTAGCATTTTGGAGTCTTTAAGGGTTTGGGCGcagctaaaagaaaaaaaatccataatccAGACCAAAGAATTGCACGAAAACCTCTCTCGCTTTCATTCTTTTAAGCCTTCTCCTCCACATCGCGAGTCAGTTACCTGAATCTATTGACGTCACCGCGTCTTTCAAAAAGAGAAATATTCACCTCAAAAGGTTTTGATTTCAGCCACAAAGAGGAGGCGCTGGTATTGATCAGAGTCGCTGTCTGTCTGTTCTTTTCTCTACCAGGGACCGAAGAGCTCCAGCCTCTATAGAGGGACTCAGACAGGGTGGGAGGAGATCCCAGCAGGGTTCAGCTCCTCACCAATGGGTTTATGGTCTGAAGACGAGCAGCACTCATCTCTTTCACATCCTTTGTAGGTCAGTTCCTATTTTTACTCGTTTTCTTCCCctatttttttttgtgcaaggACACCCATTGTTGTCGCCCGACACAAGCAAAGTCTGTCGTATTGGTAAACAAATCAATTACTCTTTCACAATGGCTGCGATGTGCTCATCAAAGACACATTATCACTCTGTGCCGTATTGTTGTCATCATGACACCTCTAATCATGGTTAT
>TCONS_00055627
GCTTTAGCCAAGCCCAGTGTGCTGGATTTAAATGGTCCAGTTTTGTCACATTTGCTTTGCTCAACCGAGCACTGGCGCTAAGGTAACCACTCTTGGCTCAGAGCCTGTTGTTTAGAACACGAAACAAATTGACTTCTCCTCCCCCAAGTCTTTGCCTTTTGTAATTTTGCTTTGGCGTTGTTGTTTGTGTGTGACCAGCCCTGGGATTTCACCTCGTCCTTGAGAGACCAGCGCAAATCAACACAGATAAGACATCCCGACCCTGTTCACCTAACCCGGAGGGTCGTTTTCCTTCGAGACACGTGGACGGAGACGTACGCGACACTAGGGACCGAAGAGCTCCAGCCTCTATAGAGGGACTCAGACAGGGTGGGAGGAGATCCCAGCAGGTAAAAAGACCCACCGCAGGTCACGACCACAAACAGCATATCAGCTGGCTATTTCTGAAGGGGCCATTGTGCTTGATTTCGGCCCAGACGCTACAGCAAAACccttacatacacatacacacacacgtccCTCACACCTGGGTGTAGGTCAAACTGTTTAAGGGCAATGGCTTGTAAATGTTACTTTCACTTGTATGGGAGgcggt
>TCONS_00057348
ATTTAAATGGTCCAGTTTTGTCACATTTGCTTTGCTCAACCGAGCACTGGCGCTAAGCCCTGGGATTTCACCTCGTCCTTGAGAGACCAGCGCAAATCAACACAGATAAGACATCCCGACCCTGTTCACCTAACCCGGAGGGTCGTTTTCCTTCGAGACACGTGGACGGAGACGTACGCGACACTAGGGACCGAAGAGCTCCAGCCTCTATAGAGGGACTCAGACAGGGTGGGAGGAGATCCCAGCAGGTAAAAAGACCCACCGCAGGTCACGACCACAAACAGCATATCAGCTGGCTATTTCTGAAGGGGCCAT
>TCONS_00058182
CAAACTGCTTTGAACTGCATGTAGCGCTTTAGCCAAGCCCAGTGTGCTGGATTTAAATGGTCCAGTTTTGTCACATTTGCTTTGCTCAACCGAGCACTGGCGCTAAGCCCTGGGATTTCACCTCGTCCTTGAGAGACCAGCGCAAATCAACACAGATAAGACATCCCGACCCTGTTCACCTAACCCGGAGGGTCGTTTTCCTTCGAGACACGTGGACGGAGACGTACGCGACACTAGTGTGAAAGACACAAGCCAAACAATGCCTGATGAAAGGACACTCTCTGCATTTGTTGCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117277

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057347 False 811 lncRNA 0.44 4 17113379 17216173
TCONS_00055626 False 731 lncRNA 0.43 2 17165644 17182108
TCONS_00055627 False 595 lncRNA 0.50 2 17181445 17216198
TCONS_00057348 False 315 lncRNA 0.53 3 17181584 17216173
TCONS_00058182 True 296 lncRNA 0.50 3 17207127 17216223

Neighbor

gene id symbol gene type direction distance location
XLOC_028689 sox5 coding downstream 57429 16982249 ~ 17055950 (-)
XLOC_028688 strap coding downstream 230328 16876831 ~ 16883051 (-)
XLOC_028687 tmpoa coding downstream 237043 16857722 ~ 16876336 (-)
XLOC_028686 slc25a3a coding downstream 259905 16844973 ~ 16853474 (-)
XLOC_028685 ldhba coding downstream 277373 16828752 ~ 16836006 (-)
XLOC_028691 si:dkey-172o10.8 coding upstream 27849 17244072 ~ 17244923 (-)
XLOC_028692 lrmp coding upstream 36373 17252596 ~ 17278928 (-)
XLOC_028693 parpbp coding upstream 121540 17337763 ~ 17353972 (-)
XLOC_028694 th2 coding upstream 164355 17380578 ~ 17391091 (-)
XLOC_028695 pah coding upstream 175457 17391680 ~ 17409533 (-)
XLOC_028684 NA non-coding downstream 288823 16763705 ~ 16824556 (-)
XLOC_028673 NA non-coding downstream 799435 16295524 ~ 16313944 (-)
XLOC_028674 NA non-coding downstream 812137 16299656 ~ 16301242 (-)
XLOC_028672 BX649423.3 non-coding downstream 899839 16213424 ~ 16213540 (-)
XLOC_028671 NA non-coding downstream 921196 16127673 ~ 16192183 (-)
XLOC_028696 NA non-coding upstream 355072 17571295 ~ 17629444 (-)
XLOC_028702 BX890572.1 non-coding upstream 520220 17736443 ~ 17737812 (-)
XLOC_028707 NA non-coding upstream 658848 17875071 ~ 17882930 (-)
XLOC_028709 BX901882.1 non-coding upstream 973183 18189406 ~ 18189520 (-)
XLOC_028719 dre-let-7b non-coding upstream 1436925 18653148 ~ 18653241 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_01797763_01808798 NA coding CI01000020 null 1797498 ~ 1808924 (+)