G959659


Basic Information

Item Value
gene id G959659
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26097050 ~ 26154913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1093952
ctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaatctcggacctgcctggtgtgttccttgtccttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactaaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatacttt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1093952 True 556 lncRNA 0.40 2 26097050 26154913

Neighbor

gene id symbol gene type direction distance location
LOC110536590 cul2 coding upstream 240855 25834973 ~ 25856195 (+)
fzd8a LOC106578536 coding upstream 366244 25728061 ~ 25730806 (+)
pfkpa LOC106578535 coding upstream 874385 25194453 ~ 25222665 (+)
LOC110535530 LOC106578529 coding upstream 1270028 24797246 ~ 24827022 (+)
LOC118937338 NA coding upstream 1350368 24732370 ~ 24746682 (+)
LOC110536591 LOC106578544 coding downstream 463235 26618148 ~ 26700276 (+)
LOC118936350 NA coding downstream 558682 26713595 ~ 26751558 (+)
LOC110535543 LOC106590025 coding downstream 605404 26760317 ~ 26809964 (+)
rab18a LOC106578546 coding downstream 657113 26812026 ~ 26823822 (+)
waca LOC106590019 coding downstream 1202853 27357766 ~ 27401629 (+)
G959637 NA non-coding upstream 24364 26058153 ~ 26072686 (+)
G959510 NA non-coding upstream 327211 25769055 ~ 25769839 (+)
G959464 NA non-coding upstream 407347 25689336 ~ 25689703 (+)
G959463 NA non-coding upstream 408062 25688764 ~ 25688988 (+)
G959454 NA non-coding upstream 412778 25684049 ~ 25684272 (+)
LOC110535542 LOC106578541 non-coding downstream 245662 25858845 ~ 26401631 (+)
G959852 NA non-coding downstream 286029 26440942 ~ 26441293 (+)
G960486 NA non-coding downstream 360083 26514996 ~ 26515221 (+)
G960633 NA non-coding downstream 502812 26657725 ~ 26690205 (+)
G960689 NA non-coding downstream 546039 26700952 ~ 26701181 (+)
G958300 idi1 other upstream 1301314 24794600 ~ 24795736 (+)
G957942 NA other upstream 1495397 24600471 ~ 24601653 (+)
G956797 NA other upstream 2320205 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 2431120 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 3355803 22712577 ~ 22741263 (+)
G960696 LOC106583976 other downstream 558712 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 773763 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 1254089 27409002 ~ 27412913 (+)
mtpap LOC106578552 other downstream 1608075 27739381 ~ 27765414 (+)
G961864 NA other downstream 1673833 27828746 ~ 27829177 (+)

Expression


Co-expression Network