G960787 (LOC106578547)


Basic Information

Item Value
gene id G960787
gene name LOC106578547
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26873010 ~ 26873337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1095212
AAACAAAGTTTGCCTCGGTTTCTGAGGACGACGGGGAGAGGAGATCGTCGTCATACTCGTTGGAGCTGAAGGATCCCGAGTGGTTCCTCTTCCTGGCGTCCATGACACCGTTGGCCACCATCACGTGTCTCAGCGAGTCGTTAAGGTACCGGTGAAGCAAGCTGCTCTTGTACTTAGGAGGCGGAGTCACGTAGTCCTCGGCCAATGAGGCGGCGTCAGCGGCTCGGAGCCCCGTCCCCATCATGGTGGCACCCTCTTTCTTGATGACGCTCTGGTACATGGGCTTGCTGAACTCGCCGCCGCTCGTCTGCATCCGCTGAGGGTTGTC

Function

NR:

description
PREDICTED: homeobox protein Mohawk-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1095212 True 328 lncRNA 0.59 1 26873010 26873337

Neighbor

gene id symbol gene type direction distance location
rab18a LOC106578546 coding upstream 49188 26812026 ~ 26823822 (+)
LOC110535543 LOC106590025 coding upstream 63046 26760317 ~ 26809964 (+)
LOC118936350 NA coding upstream 121452 26713595 ~ 26751558 (+)
LOC110536591 LOC106578544 coding upstream 172734 26618148 ~ 26700276 (+)
LOC110535542 LOC106578541 coding upstream 472075 25858845 ~ 26401631 (+)
waca LOC106590019 coding downstream 484429 27357766 ~ 27401629 (+)
bambia LOC106578551 coding downstream 536216 27409002 ~ 27412913 (+)
LOC110536609 NA coding downstream 719789 27593126 ~ 27597600 (+)
mtpap LOC106578552 coding downstream 866044 27739381 ~ 27765414 (+)
jcada LOC106578555 coding downstream 936712 27810049 ~ 27845341 (+)
G960784 NA non-coding upstream 4337 26868397 ~ 26868673 (+)
G960783 NA non-coding upstream 5413 26867365 ~ 26867597 (+)
G960781 NA non-coding upstream 9446 26863338 ~ 26863564 (+)
G960780 NA non-coding upstream 10667 26861765 ~ 26862343 (+)
G960778 NA non-coding upstream 12188 26860607 ~ 26860822 (+)
G960800 NA non-coding downstream 25620 26898957 ~ 26899796 (+)
G960818 NA non-coding downstream 57345 26930682 ~ 26930885 (+)
G960822 NA non-coding downstream 62765 26936102 ~ 26936345 (+)
G960823 armc4 non-coding downstream 63492 26936829 ~ 26937059 (+)
G960824 NA non-coding downstream 64756 26938093 ~ 26938429 (+)
G960696 LOC106583976 other upstream 75716 26713625 ~ 26797294 (+)
G958300 idi1 other upstream 2077274 24794600 ~ 24795736 (+)
G957942 NA other upstream 2271357 24600471 ~ 24601653 (+)
G956797 NA other upstream 3096165 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 3207080 23665288 ~ 23665930 (+)
G960816 armc4 other downstream 55339 26928676 ~ 26929027 (+)
G961864 NA other downstream 955409 27828746 ~ 27829177 (+)
G961984 NA other downstream 1023829 27897166 ~ 27941575 (+)

Expression


Co-expression Network