G960800


Basic Information

Item Value
gene id G960800
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26898957 ~ 26899796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1095226
tctgaCTGTTTTTCCATGTACAGTATGAATCTGTTATTTAATGTGTTTTTATGGGCTAATAGAAGTAATGGCTTAGACTCTAAAAGATCAGGGGAGCCCAATTGAGAACAGGGTCTCATTTTCAATGGTGCCCTGAGGACATGACATAAAAGGTAAAACTACAAGATAAAATAACAAGTACATTACAGGCATCATAAACACATTTTTAAAGTCAATCAATCAAAACAATTGCACACCTCAGTGGACTCATTTATCATCAGGGTTTTAAACTGCCCTAGTGGCACCAAGGaatccaaaggtttaagagtagtggcTGCTGCATTCCCATAAATGGTGTCACCGTAGAGAAGAACTGGCAGGAAATTTGACTGTACATATCATACAaatttgagtgtcccagattttTGTTTACTATACTACGTCtgccctgagtccaggttgcagGGTGAAACAATGAAAactgaaatgtttgttttttctaaGGACACGGGACACAAGACGGAGGTGGTAAAGGAGGTCACACTCACTCATCAAGTTTCCTACTACAGTGGTAGGGATGTCTGAGCTTAAGCAGAAATCCATTCTCATCCAATCCCTTCTCTTTTGTTATGTTTTGTATTCTCTTCAATAAAAAGCAATCTATTCTCTCTTTATTAAGTTCATGTTATTATTTGTATGAAAAAGCAGCAGAGCAGTTATTGTCTTTAATGGGAAAAAAAATGCAGTTGTTTATGAGTCATTTAAAGGGTATTGTCGAGCAGAAGCCACACTAGGGTTTT
>TU1095225
ATTTTTAAAGTCAATCAATCAAAACAATTGCACACCTCAGTGGACTCATTTATCATCAGGGTTTTAAACTGCCCTAGTGGCACCAAGGaatccaaaggtttaagagtagtggcTGCTGCATTCCCATAAATGGTGTCACCGTAGAGAAGAACTGGCAGGAAATTTGACTGTACATATCATACAaatttgagtgtcccagattttTGTTTACTATACTACGTCtgccctgagtccaggttgcagGGTGAAACAATGAAAactgaaatgtttgttttttctaaGGACACGGGACACAAGACGGAGGTGGTAAAGGAGGTCACACTCACTCATCAAGTTTCCTACTACAGTGGTAGGGATGTCTGAGCTTAAGCAGAAATCCATTCTCATCCAATCCCTTCTCTTTTGTTATGTTTTGTATTCTCTTCAATAAAAAGCAATCTATTCTCTCTTTATTAAGTTCATGTTATTATTTGTATGAAAAAGCAGCAGAGCAGTTATTGTCTTTAATGGGAAAAAAAATGCAGTTGTTTATGAGTCATTTAAAGGGTATTGTCGAGCAGAAGCCACACTAGGGTTTTGGTTCTGAGatgtgtatatacactaccggtcaaaagttagaacacctactcattcaagggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1095226 False 779 lncRNA 0.38 1 26898957 26899735
TU1095225 True 639 lncRNA 0.38 1 26899158 26899796

Neighbor

gene id symbol gene type direction distance location
rab18a LOC106578546 coding upstream 75135 26812026 ~ 26823822 (+)
LOC110535543 LOC106590025 coding upstream 88993 26760317 ~ 26809964 (+)
LOC118936350 NA coding upstream 147399 26713595 ~ 26751558 (+)
LOC110536591 LOC106578544 coding upstream 198681 26618148 ~ 26700276 (+)
LOC110535542 LOC106578541 coding upstream 498022 25858845 ~ 26401631 (+)
waca LOC106590019 coding downstream 457970 27357766 ~ 27401629 (+)
bambia LOC106578551 coding downstream 509757 27409002 ~ 27412913 (+)
LOC110536609 NA coding downstream 693330 27593126 ~ 27597600 (+)
mtpap LOC106578552 coding downstream 839585 27739381 ~ 27765414 (+)
jcada LOC106578555 coding downstream 910253 27810049 ~ 27845341 (+)
G960787 LOC106578547 non-coding upstream 25620 26873010 ~ 26873337 (+)
G960784 NA non-coding upstream 30284 26868397 ~ 26868673 (+)
G960783 NA non-coding upstream 31360 26867365 ~ 26867597 (+)
G960781 NA non-coding upstream 35393 26863338 ~ 26863564 (+)
G960780 NA non-coding upstream 36614 26861765 ~ 26862343 (+)
G960818 NA non-coding downstream 30886 26930682 ~ 26930885 (+)
G960822 NA non-coding downstream 36306 26936102 ~ 26936345 (+)
G960823 armc4 non-coding downstream 37033 26936829 ~ 26937059 (+)
G960824 NA non-coding downstream 38297 26938093 ~ 26938429 (+)
G960828 NA non-coding downstream 45639 26945435 ~ 26945667 (+)
G960696 LOC106583976 other upstream 101663 26713625 ~ 26797294 (+)
G958300 idi1 other upstream 2103221 24794600 ~ 24795736 (+)
G957942 NA other upstream 2297304 24600471 ~ 24601653 (+)
G956797 NA other upstream 3122112 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 3233027 23665288 ~ 23665930 (+)
G960816 armc4 other downstream 28880 26928676 ~ 26929027 (+)
G961864 NA other downstream 928950 27828746 ~ 27829177 (+)
G961984 NA other downstream 997370 27897166 ~ 27941575 (+)

Expression


Co-expression Network