G960828


Basic Information

Item Value
gene id G960828
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26945435 ~ 26945667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1095254
CTAATGTGTTATTATGTGGCAGTAAAATGAAGAAGCCACTTATGCAACAAAAATGATCACATTctagccgtcattgtaaacactTACACAATAGACAACCTTTGAGTGTGGTTTGCTAAGTAATAAACATGTTAATAAATTTGGCACCTAAATATTTTTTGTTAATCATCACTTAAGCCACTTATCGCCAATGCTTTATCAAAAAAAAATAGGGTAATTGGTAGCAGCTATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1095254 True 233 lncRNA 0.33 1 26945435 26945667

Neighbor

gene id symbol gene type direction distance location
rab18a LOC106578546 coding upstream 121613 26812026 ~ 26823822 (+)
LOC110535543 LOC106590025 coding upstream 135471 26760317 ~ 26809964 (+)
LOC118936350 NA coding upstream 193877 26713595 ~ 26751558 (+)
LOC110536591 LOC106578544 coding upstream 245159 26618148 ~ 26700276 (+)
LOC110535542 LOC106578541 coding upstream 544500 25858845 ~ 26401631 (+)
waca LOC106590019 coding downstream 412099 27357766 ~ 27401629 (+)
bambia LOC106578551 coding downstream 463886 27409002 ~ 27412913 (+)
LOC110536609 NA coding downstream 647459 27593126 ~ 27597600 (+)
mtpap LOC106578552 coding downstream 793714 27739381 ~ 27765414 (+)
jcada LOC106578555 coding downstream 864382 27810049 ~ 27845341 (+)
G960824 NA non-coding upstream 7006 26938093 ~ 26938429 (+)
G960823 armc4 non-coding upstream 8376 26936829 ~ 26937059 (+)
G960822 NA non-coding upstream 9090 26936102 ~ 26936345 (+)
G960818 NA non-coding upstream 14550 26930682 ~ 26930885 (+)
G960800 NA non-coding upstream 45639 26898957 ~ 26899796 (+)
G960831 NA non-coding downstream 4267 26949934 ~ 26950145 (+)
G960837 armc4 non-coding downstream 9582 26955249 ~ 26955472 (+)
G960842 NA non-coding downstream 52345 26998012 ~ 27062519 (+)
G960884 NA non-coding downstream 186590 27132257 ~ 27137114 (+)
G960892 NA non-coding downstream 203980 27149647 ~ 27149960 (+)
G960816 armc4 other upstream 16408 26928676 ~ 26929027 (+)
G960696 LOC106583976 other upstream 148141 26713625 ~ 26797294 (+)
G958300 idi1 other upstream 2149699 24794600 ~ 24795736 (+)
G957942 NA other upstream 2343782 24600471 ~ 24601653 (+)
G956797 NA other upstream 3168590 23775772 ~ 23776845 (+)
G961864 NA other downstream 883079 27828746 ~ 27829177 (+)
G961984 NA other downstream 951499 27897166 ~ 27941575 (+)
LOC110535556 LOC106578558 other downstream 1186954 28132122 ~ 28249912 (+)

Expression


Co-expression Network