G960842


Basic Information

Item Value
gene id G960842
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26998012 ~ 27062519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1095277
GctgggaggaaaggggacagtcaaaggatgcggaaagggaggagagtagtgTCGAAGAGGCAAAGACATGATACAGGAGGGAGAAGGATCTAGcaaacaaagtagtgatcaggaaacaaagtagtgatcagcGACATGGAGGGGGGTTGTAGTGAGATTAGTAGGCAAACAGCCTCTAGTGAAGTGTGAGAAAAACACATGGTTTCATGTGATTTTACATGTGGAAATCAACATGTGAAACTTCATGTGAAATATCACCACATGTGGAATCATGCGATTTTCCGTAAGgggttacatcccaaatgacaccgtaTTCCCGACACCTTATTCCCGACATAGTGCACCACTataatcaaaagtagtgcactattaagggaatagggtgccttttgggacacatTCTCAGTTCTATTTACACAAGTGTGCACTCCGTGTAGGTGTTTTTCGTCTTTATCGGAGCGAGCGAAAGTTGCGCTAAATGGCTCAGAAACAAATTCTAGACATACAAGATCGTGACAACCCCAAGCGTCCCATGTCACTGTCGTGATCCTATGAGAGGAAAATGAACTCATGGCTACAATCATCATTCACTTGCCATATTACAAACTCTAGTTTTCCATACGGGTTATTAGCATCTTAGAAAAATACACATTTGGTTTAATATTTTTAtataaaatgtacaaataaaaaagaaaaaagtgAAATCACACAATTTGCCTCACAGTAATTGAATGTACAGTCAGAAGGACAATATCTGCACAGACAGAACTCTGATACGGCTGGCTGGAGGGTAAATATGAACCTAACATCATATAAACATGAAATAAAAGAATGAGGAAACTAGAGGGTTAAACCTGTAGTGTAGATAAACATGGTAGTGTAGTGGCTTAACCTCaaacaaatatatttgtttaaataGATACACAATCTCCTGATAATCAGAAAAATACAGAACAGGTGTGTATCTGCGATACTAAGAACATTTGAAATGAACAAAAACACTGGGATAAAGGaagcgagggatagagggaaacCTGCTGTAAAAGAGAAGAGACACCAGACAGCGAGATCGCTCTGGTGCATCGTCATGACTCATGATGACCTTAGCTCAACACAGAGCTAACGAACTAACGCCACATGATTGGTGATGTGAGAGTGTGAAAtcacggagagagacagagagagaacataggGGCACTGAGggaaacCTGCTGTAAAAGAGAAGAGACACCAGACAGCGAGATCGCTCTGGTGCATCGTCATGACTCATGATGACCTTAGCTCAACACAGAGCTAACGAACTAACGCCACATGATTGGTGATGTGAGAGTGTGAAAtcacggagagagacagagagagaacataggGGCACTGAGGTCACTGCACCCAGCAATTTCGCAACCCTAGATATGGTACACACAAATATTCTCTCATCAAACAATCGAAGACAGGCTCTAGTCTAGACACATAACCCTAGGATACAGCCAGCATACTGTATAGGAGGAACATGGTAGAGGGATAGACAGgagggttagaaagagaggggtggaggaatcCTGCAAATAACTAGCGACTCTAACCTTTCTCTATATAACCTGAACCGTGCAAAGGTAAAATCAGCTACTTTGTGTTTCTGTCTGTTGTAAATCTACTTGCGCCATGGACCCCTCTATTAGGTTCCTTGTTTTATGCCTGTTTTATGAGTGTAAAATAACGCTAACTCCACCCTAATTATACTAGATTGAGAACATTTGACTTACAACCGACGAGCCAACGTCTGCTGGTTGAAATAGCAAACTGTTATGCTGCCTGGGCACAATCATGAGTAGGACAGGGTGGAGGGCTTTATATTTAAAAAAGCCCCTAAAATAAAATGAGAAAACACCtaggctgtgtctgaaatggcaccctatcccctatgggccctggtcaaaacaagtgcactacatagggaatagggtgccgtttcgGACCCAAGCTGAGTTTAAGACTTGAAGGCAAAGAAACATTTTCATCTGTTCCCCCATTCTGCATTAATATACAAACCACCCACCATCCACAGAACAATTCAAATCCCTTAGGTTTCTATGAACTAATGTTAAAAACACACTAAGGAAGGAGTCCGAAGTTACAGTACGTTCTGGCACAGCACTGATGGGCAGTCACACCGATCTGATGAGAAGACAGTGCAGCGGTCTAGAACCAGATCAGACCAGCCCCACCCTCAGATGTCCAGCGTGTTGCATGTTGACTGAGCTAGACAGGGCCCAGAAGAAGACCAAGACAGAGACAggtttcgtcccaaatggcactctactcCCTATTTGGAAAGTACTTTCacaaagcagtgcactatatagggaatagggtgccatttgggacacacatcaAGTCAGCCCACTCTGCTGTCCAGCTGTGTTACGATCCATCCTAAACCCGACAGCACCCACCACCTACGCAGTGGACACAGAACCAACTTCATTAAAAAGCCCTCCCCTTTTTATATCCTTCTTTCTCCAAACGGTATTTCACTCTTTCTCTGTAGCTCTCAGGAGTGAGTCCAGCTGATGGGGACCCAGTGCGTGTCAGTCTCCACCTTCTTCAGAGCCACCTTCAGCTCGGTGAATGCCGCCGTCAGGTCGTCGTTGACAATGATCTTCTCAAACAGGTGGCCGTGCTGGCTTTCCATCTGCTGGGCGGTGCTCACCATCTCCAGGAAGTCCTC
>TU1095278
CGGTTGTTGCCGTTTTTTGAGTGTACTGTCCCTGacatgtttttgctttgataCCTTGGTGTAGCAGACTATGGAAGCGTTAGAAATCACAAGGGAAACGTTTATCTGAGTTTgaggctgtgtctgaaatggcaccctatcccctatgggccctggtcaaaacaagtgcactacatagggaatagggtgccgtttcgGACCCAAGCTGAGTTTAAGACTTGAAGGCAAAGAAACATTTTCATCTGTTCCCCCATTCTGCATTAATATACAAACCACCCACCATCCACAGAACAATTCAAATCCCTTAGGTTTCTATGAACTAATGTTAAAAACACACTAAGGAAGGAGTCCGAAGTTACAGTACGTTCTGGCACAGCACTGATGGGCAGTCACACCGATCTGAACCAGATCAGACCAGCCCCACCCTCAGATGTCCAGCGTGTTGCATGTTGACTGAGCTAGACAGGGCCCAGAAGAAGACCAAGACAGAGACAggtttcgtcccaaatggcactctactcCCTATTTGGAAAGTACTTTCacaaagcagtgcactatatagggaatagggtgccatttgggacacacatcaAGTCAGCCCACTCTGCTGTCCAGCTGTGTTACGATCCATCCTAAACCCGACAGCACCCACCACCTACGCAGTGGACACAGAACCAACTTCATTAAAAAGCCCTCCCCTTTTTATATCCTTCTTTCTCCAAACGGTATTTCACTCTTTCTCTGTAGCTCTCAGGAGTGAGTCCAGCTGATGGGGACCCAGTGCGTGTCAGTCTCCACCTTCTTCAGAGCCACCTTCAGCTCGGTGAATGCCGCCGTCAGGTCGTCGTTGACAATGATCTTCTCAAACAGGTGGCCGTGCTGGCTTTCCATCTGCTGGGCGGTGCTCACCATCTCCAGGAAGTCCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1095277 False 2725 lncRNA 0.44 3 26998012 27062519
TU1095278 True 927 lncRNA 0.49 2 27061568 27062519

Neighbor

gene id symbol gene type direction distance location
rab18a LOC106578546 coding upstream 174190 26812026 ~ 26823822 (+)
LOC110535543 LOC106590025 coding upstream 188048 26760317 ~ 26809964 (+)
LOC118936350 NA coding upstream 246454 26713595 ~ 26751558 (+)
LOC110536591 LOC106578544 coding upstream 297736 26618148 ~ 26700276 (+)
LOC110535542 LOC106578541 coding upstream 597077 25858845 ~ 26401631 (+)
waca LOC106590019 coding downstream 295247 27357766 ~ 27401629 (+)
bambia LOC106578551 coding downstream 347034 27409002 ~ 27412913 (+)
LOC110536609 NA coding downstream 530607 27593126 ~ 27597600 (+)
mtpap LOC106578552 coding downstream 676862 27739381 ~ 27765414 (+)
jcada LOC106578555 coding downstream 747530 27810049 ~ 27845341 (+)
G960837 armc4 non-coding upstream 42540 26955249 ~ 26955472 (+)
G960831 NA non-coding upstream 47867 26949934 ~ 26950145 (+)
G960828 NA non-coding upstream 52345 26945435 ~ 26945667 (+)
G960824 NA non-coding upstream 59583 26938093 ~ 26938429 (+)
G960823 armc4 non-coding upstream 60953 26936829 ~ 26937059 (+)
G960884 NA non-coding downstream 69738 27132257 ~ 27137114 (+)
G960892 NA non-coding downstream 87128 27149647 ~ 27149960 (+)
G960910 NA non-coding downstream 114870 27177389 ~ 27180822 (+)
G960911 NA non-coding downstream 116669 27179188 ~ 27184040 (+)
G960912 NA non-coding downstream 120721 27183240 ~ 27183895 (+)
G960816 armc4 other upstream 68985 26928676 ~ 26929027 (+)
G960696 LOC106583976 other upstream 200718 26713625 ~ 26797294 (+)
G958300 idi1 other upstream 2202276 24794600 ~ 24795736 (+)
G957942 NA other upstream 2396359 24600471 ~ 24601653 (+)
G956797 NA other upstream 3221167 23775772 ~ 23776845 (+)
G961864 NA other downstream 766227 27828746 ~ 27829177 (+)
G961984 NA other downstream 834647 27897166 ~ 27941575 (+)
LOC110535556 LOC106578558 other downstream 1070102 28132122 ~ 28249912 (+)

Expression


Co-expression Network