XLOC_028696


Basic Information

Item Value
gene id XLOC_028696
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 17571295 ~ 17629444 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058183
CAGGAGGAGGAAGATTGTGTTCTGACATTCTGAAATTGCCTTTATCGAGAGAAGGCCAAATCTGCCCTCAGATGATAAGGACTCCAGCCAGACCAATCAAATGTTAATTGAGCCCTTAGGCTGCGATCTCACCAAATGACCCCCTAAAACCAAGCAAAACTCTTCATCTGCATGATTTTATAGACTTCCCTTTTCCTGCTTTTCCGTTTTCAGTACGTCAGAGTTGAAGTACTGTGTTTCCACTTTTCTTTAATGGTGTGTTCGCACTTGGCACGTTTGCTTGGATTAAACTGAACTCAGTGATTGCTCAGGGTAGTGCTTTTGAATAAATGTGAACATTGCCATCCTAACCTTGGTGCGGACCAAACAAGTGAACAAACTCCAGTGCAGTTTGACTAAAATACAAGAACACAACAAGAGCCAATGCCATCTAAatgaaccaaaaatatatatatatttataattgtcaCAAGATGAGACACAATTTGTGAAAaaagggttaatgtaaataatgagaGATGAAAATACATTTTCCAAATAAACTCTGATTTAAGGAGCATTACACTCATGTGACTCCATTGTGTTGCTTACTGCTGGTTACTAGACTATCAATACTACAGACTGCTGCTCTAACAACaaaggggttcccaaacttttcagcccatgaCACCcgaaataacaatgccagtgactcgcgacctccaatatcctctgaggtggttataaatacagaaaccttgcatgcaatggctcACACCAATatacccaagtctattcttcccAGGGGTCgtaatccaatagaactagttaCTATAAGCTGCTATGGTAGCTATACAGTAtaaagtaactataaacgactattttttcttttgagtaGGTAATGGATAATggtcttatggtttaataaaaataaatagatttttggaaattaccAGGCGGCTTTCCCGTCATTGTTCCGCGATCCCTCAGggggtcccaacccccactttgagaagcACTGCTCTAACAAACTGATGGTAACACCCCTTATCTTCAtttgggacttttttttttgcaaactttaaaaagatttaaatcacATTAGGATGTAACCATGGCTACTGAAGAAGATCTTTATTTCTGTGTGTCAGAGGAATCCCTGGTGCTATTTTGACTCTTTTACAGGTTATATAATCTTATCGTGTTAATTTTTAGAACATGTCGCTTTAAGTAAGTGCAGTTACATAATGTAAATcataaaagtgtatatatatttaagtttggAATAAACAGCAACTGTGGCTATGTTTCGATCCACctaattttatttgcattttggatatgcgcattaaaaaattGGTTTATGGAagcgccaagatgcgcataagttttgaaaatgtgcataaaaacacatGTGCATAAATGAATAGGACAaagtttttatttgataagaaaagatacgtataaactatgatgaaaacacttttaccaaacacaTTCCAgtatatgcgcattaaaaaaggtcatgtaattttgttaaaagagatcatgtgatgataaaaatgtgtgtgaatggacaaaccagcaggctgagcacactgtaaaacatctgaaatattgttttggctattctaaaacaccttaaccattcCAGTATTGGTGTTAttatactaattaattaattacctccagaatcaaaAGCATCGGTGCTCTGCATCTCACACCTTCGACCATGCGTTCATTGCGCCTTGATATTTGTCCTCtgaaattaaaacttaaaaagatTGCAATGTCTTATTAGTTGGTTGCCTTTGACAGCACATTTCCCAACAGACCGAGATTTGGCATGTATAAGTATTGTCTCTTCTCATTGGACAAAGTACATCTGTCCTGAGATTTTGCTAGTATTGGTCATCCATCAGAATACAGGCAGCTTTATATTGTGTCTTTCTTTGAAGCTGTTGTTATATTATCATTTTGAGCCCAAAAAAGCCTTCAGCcataatttgtttgcattttttaacTGATCTGATTTTCACAAACACAGCAGCATAATAAAGCCTGGTTTGTTGGTTCCACCACAGCCTGCTCTAGAGTGTTTTCAGGTTGGTTTATTATGTGATCTCGAACCAATTGTTTTGATGCAGATCTGCCAGGTTATAAACAACGAgccaggtgtgaaagcacccaattTCGCTTTCTTTCTTGGCTTGGAGCAAAACAATCAAactacaagtgtgaacacacccttagACTGGTTAAATCCCCTTTTCCTAGAGCTCAGTTTGCTCATATCCGCAAACATTTCTCCACCACTCACATCTTTGCTCATTGTTCTGTTTGTTTGCCCATAAGCACCGCCAAAAGCTCCAACTAAAATGCCAACCAATGACCCGAAGGGTATCTGTGTCCTACACAAACTCCCCCTAAATGGTGAGGATAATGAAATTGTTGGCACACAATGTTCAATTATCCTAATCGTCCAGCCTTTTAACACTATGGATGACCTTTGAGTGGAGGACATCTATATATTTGCAAACGTTGTTCTTTCTTTGTACGTGTGTTGAGGGCCAACTGTATGAAAACAAATTAAGagtttattttttggtttctttttctcTGAACAGTATTTTCTCTgcctaaacaaaataaatatgtattctgGCTATGGAGTTGTCTCGTTTTCATCAATGCACTCATGAATAAGAAACAATGCACTACTAGCTTTGTTTCCatctatttttatgcaaattttggaatatcgcataaaaaacTGCTAAATGGAAAGGCGAAAATGTGCATTTTGAAAAAgcacataaaaaaacacataggGACAATCGAGATACAAAACTGTGCATAAACTACAACAGAAACACATTTATTGAATAAACTCCAGGATGctcattaaaaaacaacatgattttgttttaacagatcatgtgatgcaTAAAAATGGGCATGATAGGACTAATGGACATGGTAGTGATGGACAATTCAGTGGACCGATCACATtgtaaaaatctataaaaaaaaagtgtttgatcATTGTAAAATTCCCTAGCCAAAGACTGTAATCAAAATGCTTCGTTATTCAGCTGCACTCTCAAAGAACAATATCGCACCTTTAAAAGCC
>TCONS_00055639
cacacacaccatgaaCACCAAACCAATCACTGCACTGGACTGACAGCTGTCAATCCACTGGAGCAGATTATCAGGATCCAGAGATTACAACGGGGGACTTAAGCGGAGTAATTCCAACTTATGTTTGCTTAGAACTTGCTATTCGAGGGTGGAAAATTGGCCATTTTTTGATGCCTTTGAACCTGCATTTGTCACATGCGTGTGTGTGCTTTAGGGGAAGCGTGTATGAGACTGTCTAGCTGTAAATCAGGGTCACAGTCTTGCTGACTCTCACCCATCAGTGCTTAGTAGGTTCATTAGTGCTTCGGTTAGTGTTTATTTCACCTCTCCGCCACCAAAAACCATGAGTGAGGGCAAGAAGGAGTTGGAGATGAGGGACAAAGCCATCATGCATCAGCAGAGGAGACTCAAACAAGCCACTCAATTCACTCACAAGGACTCGGCCGATCTTCTGCCTCTGGACGGGCTCAAGAGAATGGGCACATCTAAAGACTTGCAACCCCACAGCATTGTGCAGCGGCGCCTCTTGGAAGGCAACATCCCCCGTCTGCGTGGAGAGACTCGGGATATCCCGTCTCATGTCCGCTCACCCCTAGCAGACAGCAAAGAGCCTGGAGAGCCCGAGGAGAGGAGCGAGAGCACAGTGGATGATTCCACAGAGGAGCGCGAGTCTCCTGAAGAGAGTGAAAAGAGCCTGAGGTCTGATGAGGATggggatgatgaagatgaaggagACAGCAGTGACGCAGGAGGAAAGACTGACTCCAAACAGAAAGAGCAGAGGAAGAAAGAGCTCAAGGAGGGAGAAAGAGCAGCCAGTCTCTCAGCTCTAGTGGTCCAGTGTAAGtgtGGAGATGCAGAGGTGATGCTATCCATAAACACAGGATGCCAACACAACCACATCTCAAAAACATGCTGCAGACGACTGGGACTAAAATCGAAGCAAGAAGATAAAGGTCGAGACAAGCAGCCAGTCAGTGAATCTTCTCCAGTGGAGACGGTGAAGTCTCTACAGCTGCAGCTGGGCAGAGAGAGAGTGCAATGCACTGCCCAGGTCATCGAGGACGCCACGTTTGAGGTGTGTTTGGGCCTACAGACTCTGCTGGAACTAAAATGCTGTGTGGATCTGAAGTCCAGAGTGCTCCGACTCCACAGCCCAGAGCAGGAGCTTCCCTTCCTGGACGCACCTGCCTGCAGCCAGTGCCATCACCacgacaacaacaaaaacatgtgACCTCCGACCTCTGTGCCCAACAACCGTCATGACCCATGTCATCAGAGAGGAAGATAACTAACAGGACGCCTGCATCTGGACTGTAGTGTTCCCTCGTGCCAGATCAACATACACAggcctctcctctcctctctcaTCTTTCCTTCTTTATTCTTCGTCGTTTGTTTCTGTGCGACTTACAGAAATCTGCCaactatgatttttttattattcttattattatttgccGTGCTGAATTAATTTGGATTAAATGTAATAAAGCTCAGGAGGAGGAAGATTGTGTTCTGACATTCTGAAATTGCCTTTATCGAGAGGTATGCAGTTAATGGATATCGATTAGTAATATTCTCTAACTGGTGATTTTAACTATATAACGAGTAAAATATATTCTTGTACGTTACTGTAACCGAGAGTTCAAGCGAAGCTGCACACTTTGAGAGATTTTGAACAATAACTAACCTGATTTTATACTTTCAAGTGTGTCAAAACGTAACAAATCAGAAACTTTCCTCAAATTTAGATAGAAATTTTACCCGAAACTGCCTTTTACTTAATGAAGTCTGTGTTTTTCTGCCCTTATTTCTCTTTAGAAGGCCAAATCTGCCCTCAGATGATAAGGACTCCAGCCAGACCAATCAAATGTTAATTGAGCCCTTAGGCTGCGATCTCACCAAATGACCCCCTAAAACCAAGCAAAACTCTTCATCTGCATGATTTTATAGACTTCCCTTTTCCTGCTTTTCCGTTTTCAGTACGTCAGAGTTGAAGTACTGTGTTTCCACTTTTCTTTAATGGTGTGTTCGCACTTGGCACGTTTGCTTGGATTAAACTGAACTCAGTGATTGCTCAGGGTAGTGCTTTTGAATAAATGTGAACATTGCCATCCTAACCTTGGTGCGGACCAAACAAGTGAACAAACTCCAGTGCAGTTTGACTAAAATACAAGAACACAACAAGAGCCAATGCCATCTAAatgaaccaaaaatatatatatatttataattgtcaCAAGATGAGACACAATTTGTGAAAaaagggttaatgtaaataatgagaGATGAAAATACATTTTCCAAATAAACTCTGATTTAAGGAGCATTACACTCATGTGACTCCATTGTGTTGCTTACTGCTGGTTACTAGACTATCAATACTACAGACTGCTGCTCTAACAACaaaggggttcccaaacttttcagcccatgaCACCcgaaataacaatgccagtgactcgcgacctccaatatcctctgaggtggttataaatacagaaaccttgcatgcaatggctcACACCAATatacccaagtctattcttcccAGGGGTCgtaatccaatagaactagttaCTATAAGCTGCTATGGTAGCTATACAGTAtaaagtaactataaacgactattttttcttttgagtaGGTAATGGATAATggtcttatggtttaataaaaataaatagatttttggaaattaccAGGCGGCTTTCCCGTCATTGTTCCGCGATCCCTCAGggggtcccaacccccactttgagaagcACTGCTCTAACAAACTGATGGTAACACCCCTTATCTTCAtttgggacttttttttttgcaaactttaaaaagatttaaatcacATTAGGATGTAACCATGGCTACTGAAGAAGATCTTTATTTCTGTGTGTCAGAGGAATCCCTGGTGCTATTTTGACTCTTTTACAGGTTATATAATCTTATCGTGTTAATTTTTAGAACATGTCGCTTTAAGTAAGTGCAGTTACATAATGTAAATcataaaagtgtatatatatttaagtttggAATAAACAGCAACTGTGGCTATGTTTCGATCCACctaattttatttgcattttggatatgcgcattaaaaaattGGTTTATGGAagcgccaagatgcgcataagttttgaaaatgtgcataaaaacacatGTGCATAAATGAATAGGACAaagtttttatttgataagaaaagatacgtataaactatgatgaaaacacttttaccaaacacaTTCCAgtatatgcgcattaaaaaaggtcatgtaattttgttaaaagagatcatgtgatgataaaaatgtgtgtgaatggacaaaccagcaggctgagcacactgtaaaacatctgaaatattgttttggctattctaaaacaccttaaccattcCAGTATTGGTGTTAttatactaattaattaattacctccagaatcaaaAGCATCGGTGCTCTGCATCTCACACCTTCGACCATGCGTTCATTGCGCCTTGATATTTGTCCTCtgaaattaaaacttaaaaagatTGCAATGTCTTATTAGTTGGTTGCCTTTGACAGCACATTTCCCAACAGACCGAGATTTGGCATGTATAAGTATTGTCTCTTCTCATTGGACAAAGTACATCTGTCCTGAGATTTTGCTAGTATTGGTCATCCATCAGAATACAGGCAG

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0042982 amyloid precursor protein metabolic process biological_process
GO:0042983 amyloid precursor protein biosynthetic process biological_process
GO:0042984 regulation of amyloid precursor protein biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0032940 secretion by cell biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098657 import into cell biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0140115 export across plasma membrane biological_process
GO:0023061 signal release biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0061024 membrane organization biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:1903018 regulation of glycoprotein metabolic process biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0001101 response to acid chemical biological_process
GO:0010559 regulation of glycoprotein biosynthetic process biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0051641 cellular localization biological_process
GO:0051648 vesicle localization biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005391 sodium molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0016462 pyrophosphatase activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015665 alcohol transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function
GO:0034632 retinol transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-9425 Predicted to enable aspartic-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to several human genes including NRIP2 (nuclear receptor interacting protein 2).

Ensembl:

ensembl_id ENSDARG00000079985

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058183 False 3112 lncRNA 0.37 2 17571295 17574682
TCONS_00055639 True 3685 mRNA 0.42 6 17572495 17629444

Neighbor

gene id symbol gene type direction distance location
XLOC_028695 pah coding downstream 161762 17391680 ~ 17409533 (-)
XLOC_028694 th2 coding downstream 180204 17380578 ~ 17391091 (-)
XLOC_028693 parpbp coding downstream 217323 17337763 ~ 17353972 (-)
XLOC_028692 lrmp coding downstream 292367 17252596 ~ 17278928 (-)
XLOC_028691 si:dkey-172o10.8 coding downstream 326372 17244072 ~ 17244923 (-)
XLOC_028697 klhl42 coding upstream 4867 17634311 ~ 17642168 (-)
XLOC_028698 BX890572.2 coding upstream 18103 17647547 ~ 17680493 (-)
XLOC_028699 dram1 coding upstream 32969 17662413 ~ 17669881 (-)
XLOC_028700 chpt1 coding upstream 77564 17707008 ~ 17725008 (-)
XLOC_028701 mybpc1 coding upstream 97397 17726841 ~ 17793152 (-)
XLOC_028690 NA non-coding downstream 355072 17113379 ~ 17216223 (-)
XLOC_028684 NA non-coding downstream 746739 16763705 ~ 16824556 (-)
XLOC_028673 NA non-coding downstream 1257351 16295524 ~ 16313944 (-)
XLOC_028674 NA non-coding downstream 1270053 16299656 ~ 16301242 (-)
XLOC_028672 BX649423.3 non-coding downstream 1357755 16213424 ~ 16213540 (-)
XLOC_028702 BX890572.1 non-coding upstream 106999 17736443 ~ 17737812 (-)
XLOC_028707 NA non-coding upstream 245627 17875071 ~ 17882930 (-)
XLOC_028709 BX901882.1 non-coding upstream 559962 18189406 ~ 18189520 (-)
XLOC_028719 dre-let-7b non-coding upstream 1023704 18653148 ~ 18653241 (-)
XLOC_028720 dre-let-7a-3 non-coding upstream 1024711 18654155 ~ 18654261 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_01510968_01538886 NRIP2 coding CI01000020 null 1509579 ~ 1539130 (+)